Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11105 ATGAAGGTGATATCCTTATGTCAACAAGGAGCCGAAGCTATATGCATCATATCTGCGAATGGTGTAATTTCAAATGCTAAACTTCGTGAGACTGCTTCTTCTGAGGATACTTCGACCTATGAGGGGCTATTTGAGATACTTACTTTGTGTGGATCATTCATTCTTGGCAGCAATGAAGGAGCATCAGGTGGGATGAGTGTCTCACTAGCTACTCAAGATTGTCGGGTAATAAGTGGTGGAGTTGCAGGCCTTCTCATAGCTGCCAGTCCTGTAAATGTGGTGGTGGGACGTTTTCTACCAGCATGA 306 0.4444 MKVISLCQQGAEAICIISANGVISNAKLRETASSEDTSTYEGLFEILTLCGSFILGSNEGASGGMSVSLATQDCRVISGGVAGLLIAASPVNVVVGRFLPA. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11105 101 ProSiteProfiles PPC domain profile profile. 1 101 IPR005175 -
Seca4g11105 101 Pfam Plants and Prokaryotes Conserved (PCC) domain 2 98 IPR005175 -
Seca4g11105 101 CDD DUF296 2 98 IPR005175 -
Seca4g11105 101 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 100 IPR039605 GO:0003680
Seca4g11105 101 SUPERFAMILY AF0104/ALDC/Ptd012-like 7 100 - -
Seca4g11105 101 Gene3D - 1 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11105 Seca-Chr4 249313738 249316572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11105 1 99 AT-hook Motif Nuclear Localized (AHL) Family AT5G51590 58.824 1.22e-32 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11105 - - ccaj:109801852 127.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11105 4 249313738 249316572 Seca4g11105 4 249313738 249316572 ECH
Seca4g11105 4 249313738 249316572 Seca2g01178 2 19021598 19026406 PCT