Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11083 ATGGCTAGTTCTGATTGCAATTTACTAGTTGTGGCCCTTATCTTTGGTACTGCCTTTTATGTCTTGTTCCCACAAGCTGCTGTTGTTGCCACCAACATAGTAGCTTCTAATTCCTCATCCATAAATGAGGAACAAGAGGCTTTGTTCCAGAGCAGGTGGGTAGGAGGACGAAATATCTCAGAATATTGCAAATGGAATGGTATTGTGTGCGACCAAGTAGGAAGTATAAAAGAGATTTCAACTAGCAATTATTTTTATGTTCCTCCAACAGAATTGCAGATTCAGAACTTCAATATGACTGCATTCCCCAATTTAATCCGTTTAGAACTTAGTGGATTGGGACTCAAAGGAAGCATCCCCACAGAAATAAGCTCTCTTACAAAGCTCAGGTATCTTGACCTGTCTTCCAATTGTCTTCAAGGTGAGTTGCCTAGTTCACTTTCAATTCTCACTCAACTTGAGACATTTAAAATTTCTAACAATTTTCTTACTGGTGTCATCCCTCCTACTTTGGGTCAATTGCATCATCTGACCCAACTCTCCCTTGACTCAAACCAAGTTCAAGGCCCCATCCCTGCAGAACTGGAGAATTTAAAAGGTTTAGAGCAACTAACTCTATCAAACAACATGCTCAATGGTTCAATCCCTTCTACTTTAGAGCAGTTGGTCCATCTCAAAGTATTAGATCTTTCTCACAATAAGATTCTTGGTGTTATACCTGAAGGGATATCTTCACTAACACAACTGACAAATGTTAATTTATCTTGGAATCAAATTACTGGTTTCATCCCATCTGGTTTTGGAGAAATGCCAAGACTTGAAGTTTTAGATATTTCCAACAATAGGCTTGAGGGACCAATACCATATGGTATTTTAAACCATTGTAGTCATTTGCAGCTAAGCAATAACTCTTTAAATGGAAGCATCCCTTCTCAAATTGACAATATTACTTATCTAGATCTTAGTTTCAATAACCTCACTGGCAACATACCTCATGGACTCTATTTTGTACCACACCTCAATTTGTCTTACAATTCCTTTGACTATTCAGATCACTATTACAGTTTTTGTAGTTTTCCAAAAGACTCATTAATTGGCAATCGAAATGGTTACCCATGCTCTTCTAGTCCTTATGTACTTCCTATAGCAATATTGGTGATCTGCTCTGCTGTCAGCGGCATGATATTTTCACTACTATTTGTATGTTGGGGAATTCATATTTTTTGTCCCTTACATGATAAGTTTGGGAATAAGGAAAGAAGAAAGAATGGAGACATGATCTCAATTTGGAACTACGATGGTAAAATTGCATTTGAAGACATAATTAAAGCCACAGAGGACTTTGATATAAGGTATTGCATAGGAACAGGTGCTTATGGGAGTGTTTACAAAGCACAACTTCCCAGTGGTAGAATTGTTGCACTGAAGAAGCTTCACAAAACAGAAGCTGAAAACCCATCCTTTTACAAGAGTTTTTGTAATGAGGTTGAGATCTTGACAAAAATTCGTCATCGCAACATCATTAGGCTCTATGGTTTTTGCTTGCATAACAAGTGCATGTTTTTGGTGTATGAGTATATGAAAAGGGGAAGCTTATTTTACAACTTGTTCAATGATGTGGAAGCTCAAGAGTTGAATTGGAGCAAGAGGATAAACATTGTTAAAGAGATAGCCTATGCCCTGTCTCACATGCATCATCATTGTACTCAACCAATTGTTCATCGAGACGTGACTAGTAACAATGTTTTGTTGAATTCAGAGTTACAAGCTTTTGTCTCAGACTTTGGCATAGCAAGACTTCTTAATTGCCATTCATCTAATCAAAGTATGCTTGTTGGTACTCGTGGATATGTTGCTCCAGAATTGGCTTACACTTTGACTGTGACAACAAAAGTAGATGTTTATAGCTTTGGAGTGGTGGCTTTAGAAACAATGATGGGTAGACATCCAGCTGAATTGATCTCCTCTTTGTCAGAACCATCTACTCAAAACAAGAAGCTGAAAGATATATTGGACTCACGTATTCCACTACCATTTTTTCGTAAAGAGATGCAAGATATTGTGCTTGTGGTAACATTAGCATTAGCATGCTTGTGCCCCGACCCAAAATCCAGACCATCAATGCAGGAAGTAGCTAATGAGCTTATAGTTTGCAAGCCACCATTGCTTTGGCATTTTTATGACATTTCAATCCACCAATTGATGAAACAAAAGATATATGTAATAGGTAAAAGTTAG 2238 0.3767 MASSDCNLLVVALIFGTAFYVLFPQAAVVATNIVASNSSSINEEQEALFQSRWVGGRNISEYCKWNGIVCDQVGSIKEISTSNYFYVPPTELQIQNFNMTAFPNLIRLELSGLGLKGSIPTEISSLTKLRYLDLSSNCLQGELPSSLSILTQLETFKISNNFLTGVIPPTLGQLHHLTQLSLDSNQVQGPIPAELENLKGLEQLTLSNNMLNGSIPSTLEQLVHLKVLDLSHNKILGVIPEGISSLTQLTNVNLSWNQITGFIPSGFGEMPRLEVLDISNNRLEGPIPYGILNHCSHLQLSNNSLNGSIPSQIDNITYLDLSFNNLTGNIPHGLYFVPHLNLSYNSFDYSDHYYSFCSFPKDSLIGNRNGYPCSSSPYVLPIAILVICSAVSGMIFSLLFVCWGIHIFCPLHDKFGNKERRKNGDMISIWNYDGKIAFEDIIKATEDFDIRYCIGTGAYGSVYKAQLPSGRIVALKKLHKTEAENPSFYKSFCNEVEILTKIRHRNIIRLYGFCLHNKCMFLVYEYMKRGSLFYNLFNDVEAQELNWSKRINIVKEIAYALSHMHHHCTQPIVHRDVTSNNVLLNSELQAFVSDFGIARLLNCHSSNQSMLVGTRGYVAPELAYTLTVTTKVDVYSFGVVALETMMGRHPAELISSLSEPSTQNKKLKDILDSRIPLPFFRKEMQDIVLVVTLALACLCPDPKSRPSMQEVANELIVCKPPLLWHFYDISIHQLMKQKIYVIGKS. 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11083 745 Pfam Leucine rich repeat 224 283 IPR001611 GO:0005515
Seca4g11083 745 Pfam Leucine rich repeat 152 211 IPR001611 GO:0005515
Seca4g11083 745 FunFam Nuclear pore complex protein NUP107 31 193 - -
Seca4g11083 745 Pfam Leucine Rich Repeat 128 148 IPR001611 GO:0005515
Seca4g11083 745 PRINTS Leucine-rich repeat signature 270 283 - -
Seca4g11083 745 PRINTS Leucine-rich repeat signature 225 238 - -
Seca4g11083 745 ProSitePatterns Tyrosine protein kinases specific active-site signature. 572 584 IPR008266 GO:0004672|GO:0006468
Seca4g11083 745 SMART LRR_typ_2 198 221 IPR003591 -
Seca4g11083 745 SMART LRR_typ_2 126 150 IPR003591 -
Seca4g11083 745 SMART LRR_typ_2 270 294 IPR003591 -
Seca4g11083 745 SMART LRR_typ_2 246 269 IPR003591 -
Seca4g11083 745 SMART LRR_typ_2 222 245 IPR003591 -
Seca4g11083 745 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 219 309 - -
Seca4g11083 745 SUPERFAMILY L domain-like 62 345 - -
Seca4g11083 745 Gene3D Transferase(Phosphotransferase) domain 1 527 720 - -
Seca4g11083 745 Gene3D Ribonuclease Inhibitor 194 291 IPR032675 -
Seca4g11083 745 Gene3D Ribonuclease Inhibitor 33 193 IPR032675 -
Seca4g11083 745 Gene3D Ribonuclease Inhibitor 292 371 IPR032675 -
Seca4g11083 745 FunFam Leucine-rich repeat receptor-like protein kinase 527 722 - -
Seca4g11083 745 Pfam Protein kinase domain 453 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11083 745 FunFam Leucine-rich repeat receptor protein kinase MSP1 412 526 - -
Seca4g11083 745 ProSiteProfiles Protein kinase domain profile. 448 723 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11083 745 Gene3D Phosphorylase Kinase; domain 1 413 526 - -
Seca4g11083 745 ProSitePatterns Protein kinases ATP-binding region signature. 454 476 IPR017441 GO:0005524
Seca4g11083 745 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 100 715 - -
Seca4g11083 745 SUPERFAMILY Protein kinase-like (PK-like) 427 717 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11083 Seca-Chr4 249146390 249148762 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11083 105 646 Receptor kinase-like Gene Family AT4G08850 37.743 9.59e-110 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca4g11083 Pkinase 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11083 - - vun:114165534 1064.68