Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11081 ATGGCTAGTTCTGGTTGCAATTTACTAGTAGTGGCCCTTATCTTTGGTACTGCCTTTTATGTCTTGTTCCCACAAGCTGCTGTTGTTGCCACCAACATAGTAGCTTCTAATTCCTCATCCATAAATGAGGAACAAAAGGCTTTGCTCCAGAGCAGGTGGGGAGGAGGCAAAAATATCTCAAAATATTGTAAATGGAATGGTATTGTTTGTGATGAAGTTGGAAGTATAAAAGAGATTTCAACTAGCAATTATTTTTATGTTCCTCCAACAGAATTGCAGATTCAGAACTTCAATATGACAGCATTCCCCAATTTAATCCGTTTAGAACTTAGTGGATTGGGACTCAAAGGAAGCATCCCCACAGAAATAAGCTCTCTTACAAAGCTCAGGTATCTTGACCTGTCTTCCAATTGTCTTCAAGGTGAGTTGCCTAGTTCACTTTCAAATCTCACTCAACTTGAGACACTTGATATTTCCAACAATTTTCTTACTGGTGTCATCCCTCCGACTTTGGGTCAATTAAAATATTTGACAAAACTTTCCCTTGACTCAAACCAAATTGAAGGTCCCATCCCTTCAGAACTATGGAATTCAAAAAGTTTAGAGCAACTAACTCTTTCAAACAACTTACTCAATGGTTCAATCCCTTCTACTTTAGAGCACTTGGCCCATCTCAAAGTTTTAGATCTTTCTCACAATAAGATTCTCGGTGTTATACCAGAAGGGATATCTTCACTAACACAACTGACAAAAGTTAATTTATCTTGGAATCAAATTACTGGTTTCATCCCATCTGGGATTGGACAAATCCCAGTACTAGAAGTTTTAGATATTTCCAACAATAGGCTTGAGGGACCCATCCCATATGGTATTTTAAACCATTGTAGCTATCTGCAGCTAAGCAACAACTCTTTAAATGGAAGCATCCCTTCTCAAATCGGCAACATTACTTATCTAGATATTAGTTATAATGACCTCACAGGTGGCATACCTGAGGGACTCCAATCTGTACCACACGTCAATTTGTCCTACAATTCCTTTGACAATTTATATGGCAGTTTTTGTGGTTTTCCACAACAATCATTAATTGGCAATCGGAATGGTTACCCGTGCTCTTCTGGTTATGTTGTTTCTATAGTAATATTGATGATTTGCTCTGCTGTCAGCAGCATGCTCATTTCATGTTGGGGAATTCAAGTTTTCTGTCCCCCACCTTGTGAGTCTGAAAACAAGGAAAGAAAAAGGAATGGAGACATGATCTCAATTTGGAACCATGATGGTAAAATTGCATTTGAAGACATAATTAAAGCCACGGAGGACTTTGATATGAGGTATTGCATAGGAACAGGTGCTTATGGAAGTGTGTACAAAGCACAACTTCCCAGTGGTAGAATTGTTGCACTAAAGAAGCTTCACAAAGCAGAATCTGAAAACCCATCCTTTTACAAGAGTTTTTGTAATGAGGTTGAGATCTTGACAAAAATTCGTCATCGCAACATCATTAGGCTCTATGGTTTTTGCTTGCATAACAAGTGCATGTTTTTGGTGTATGAGTATATGGAAAGGGGAAGCTTATTTTACAACTTGTCCAATGATGTGGAAGCTCAAGAGTTGAATTGGAGCAAGAGGATAAACATTGTTAAAGAGATAGCCTATGCCCTGTCTCACATGCATCATCATTGTGTTCAACCAATTGTTCATCGAGACGTGACTAGTAACAATGTTTTGTTGAATTCAGAGTTACAAGCTTTTGTCTCAGACTTTGGCATAGCAAGACTTCTTAATTGCCATTCATCTAATCAAAGTATGCTTGTTGGTACTCGTGGATATGTTGCTCCAGAATTGGCTTACACTTTGACTGTGACAACAAAAGTAGATGTTTATAGCTTTGGAGTGGTGGCTTTAGAAACAATGATGGGTAGACATCCAGCTGAATTGATCTCCTCTTTGTCAGAACCATCTACTCAAAACAAGAAGCTGAAAGATATATTGGACTCACGTATTCCACTACCATTTTTTCGTAAAGAGATGCAAGATATTGTGCTTGTGGTAACATTAGCATTAGCATGCTTGTGCCCCGACCCAAAATCCAGACCATCAATGCAGGAAGTAGCTAATGAGCTTATAGTTTGCAAGCCACCATTGCTTTGGCATTTTTATGACATTTCAATCCATCAATTGATGAAACAAAAGATATATGTAATAGCGTCTCTAGTAGGGGGAGCTGCTGTGGGAACAGTATTTGGAGAATTGTTGAAGGCGGTTTTGGAAATAAGAGACAAGGCCGTTATGTTCAAACAAACTTTGGCGAACCTCAGATGCACTCTAATAACAGTTGCTCCAATTATGAAAGAGATAGAGCAGCACAACATCGACCTAGGCCGTCCAAAAGAGGATCTTGAATCTCTGATAAGAGAAATGGAAGAGGGCACAAATCTTGTGTCCAAATGTGCAAAAATCCACAGATTAAATTTTATGGCCAGGGCTCGATACCAGGAGCGGCTAGAGGCATTAATGGATTCACTTGTAAGGTTTTTCATCATTGATATGCAAGCTCAGGCTACTAGAGATCAAAAGGAGACCCTGCTTAAAGTTAGAAAAATACTTAGCGCGGTCAATAAATTTCCTATGGTCAACGCAGAGGACACAACTGTTTCATCTTCTTACTTTTCCGCTGTGTCTCTGCCTGGGGACATGGAAACCAATTATAGTGAGGAAGCCATGGAACATATCATCGCTGTGAATGAGTCAGATTCAGAAACCCCTCACTCAACCGCTGAACAAGCCATGGAGCCTCTCCCTAGCATCGCCGATGAAAAATGGTACATGAATATTCTGGAAGCAGACAAAACACAGCCCCCAAAGAAAACTGAAGACGGGAAGCTATATACCCCGGCTGCTGTTGATCTATTCATGATACTTGGAGAGCAAGTTCAAATTGTTCGAGATAATAGCACTGATGTCATGTTATACAGAATCTCCTTGACAACCATTCAGGTGATGATTGATTTTCAAGCAGCCGAAAAGAAGAGACTTGAAGAACCAGCTTCTGAAATTGGTCTGGAACCTTTATGTGCTATGATTAACAACAATTTGCGTTGCTATGACCTTGCAATGGAGCTAAGTAATAGCATCATAGAAGCCCTTCCACGGAACTACGCCGAGCAGGTTAATTTTGAAGATAACTGTAAGGGTTTTCTTGAGGTTGCTAAGGAAGCTGTGCATCAAACTGTTAATGTAATATTTGAAGACCCTGGTGTCCCAGAGTTGCTGGTTAAACTATACCAGAAAGAATGGAGTGAGGGTCAGGTTACTGAGTACTTGGTTGCAACATTTGGCGATTATTTTACTGATGTAAAAATGTACATTGAAGAAAGAGCTTTTAGGAGATTTGTTGAAGCTTGCCTGGAGGAAACTGTGGTTGTTTATGTTGATCATCTTTTAACACAGAAAAATTACATCAAGGAAGAAACTATTGAACGAATGAGGCTAGATGAGGAGATTATAATGGACTTTTTTAGGGAACACATCAGTGTTTCTAAAGTTGAAAAAAGAGTGAGTGTACTTAGTGACTTGAGGGGGCTTGCTTCAGCAGAGAGCCTGGATACCTTCACACTCATCTATACAAATATACTTGAACATCAACCTGACTGCCCGCCTGAAGTTGTGGAGAAACTTGTTGGTCTACAAGAAGGAATTCCTCGGAAGGATGCCAAGGAGGTCATACAAGAATGCAAAGAGATATATGAAAATTCTCTTGTTGATGGAAGACCTCCAAAGGCTGGTTTTGTTTTTGGAAAAGTGAAGTGCTTAACAGCGTCAAAGGGAGGGATTTGGCGTAATATCCTTCCCTTGTTTATATAG 3864 0.3965 MASSGCNLLVVALIFGTAFYVLFPQAAVVATNIVASNSSSINEEQKALLQSRWGGGKNISKYCKWNGIVCDEVGSIKEISTSNYFYVPPTELQIQNFNMTAFPNLIRLELSGLGLKGSIPTEISSLTKLRYLDLSSNCLQGELPSSLSNLTQLETLDISNNFLTGVIPPTLGQLKYLTKLSLDSNQIEGPIPSELWNSKSLEQLTLSNNLLNGSIPSTLEHLAHLKVLDLSHNKILGVIPEGISSLTQLTKVNLSWNQITGFIPSGIGQIPVLEVLDISNNRLEGPIPYGILNHCSYLQLSNNSLNGSIPSQIGNITYLDISYNDLTGGIPEGLQSVPHVNLSYNSFDNLYGSFCGFPQQSLIGNRNGYPCSSGYVVSIVILMICSAVSSMLISCWGIQVFCPPPCESENKERKRNGDMISIWNHDGKIAFEDIIKATEDFDMRYCIGTGAYGSVYKAQLPSGRIVALKKLHKAESENPSFYKSFCNEVEILTKIRHRNIIRLYGFCLHNKCMFLVYEYMERGSLFYNLSNDVEAQELNWSKRINIVKEIAYALSHMHHHCVQPIVHRDVTSNNVLLNSELQAFVSDFGIARLLNCHSSNQSMLVGTRGYVAPELAYTLTVTTKVDVYSFGVVALETMMGRHPAELISSLSEPSTQNKKLKDILDSRIPLPFFRKEMQDIVLVVTLALACLCPDPKSRPSMQEVANELIVCKPPLLWHFYDISIHQLMKQKIYVIASLVGGAAVGTVFGELLKAVLEIRDKAVMFKQTLANLRCTLITVAPIMKEIEQHNIDLGRPKEDLESLIREMEEGTNLVSKCAKIHRLNFMARARYQERLEALMDSLVRFFIIDMQAQATRDQKETLLKVRKILSAVNKFPMVNAEDTTVSSSYFSAVSLPGDMETNYSEEAMEHIIAVNESDSETPHSTAEQAMEPLPSIADEKWYMNILEADKTQPPKKTEDGKLYTPAAVDLFMILGEQVQIVRDNSTDVMLYRISLTTIQVMIDFQAAEKKRLEEPASEIGLEPLCAMINNNLRCYDLAMELSNSIIEALPRNYAEQVNFEDNCKGFLEVAKEAVHQTVNVIFEDPGVPELLVKLYQKEWSEGQVTEYLVATFGDYFTDVKMYIEERAFRRFVEACLEETVVVYVDHLLTQKNYIKEETIERMRLDEEIIMDFFREHISVSKVEKRVSVLSDLRGLASAESLDTFTLIYTNILEHQPDCPPEVVEKLVGLQEGIPRKDAKEVIQECKEIYENSLVDGRPPKAGFVFGKVKCLTASKGGIWRNILPLFI. 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11081 1287 ProSiteProfiles Protein kinase domain profile. 441 716 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11081 1287 ProSiteProfiles RPW8 domain profile. 733 884 IPR008808 -
Seca4g11081 1287 Pfam Leucine rich repeat 200 259 IPR001611 GO:0005515
Seca4g11081 1287 Gene3D - 1095 1259 IPR042532 -
Seca4g11081 1287 Pfam Arabidopsis broad-spectrum mildew resistance protein RPW8 736 867 IPR008808 -
Seca4g11081 1287 SMART LRR_typ_2 150 174 IPR003591 -
Seca4g11081 1287 SMART LRR_typ_2 126 149 IPR003591 -
Seca4g11081 1287 SMART LRR_typ_2 246 270 IPR003591 -
Seca4g11081 1287 SMART LRR_typ_2 222 245 IPR003591 -
Seca4g11081 1287 PANTHER LEUCINE RICH REPEAT KINASE 2 90 712 - -
Seca4g11081 1287 FunFam Leucine-rich repeat receptor-like protein kinase 520 715 - -
Seca4g11081 1287 SUPERFAMILY Protein kinase-like (PK-like) 421 710 IPR011009 -
Seca4g11081 1287 SMART LRR_sd22_2 222 245 - -
Seca4g11081 1287 SMART LRR_sd22_2 126 152 - -
Seca4g11081 1287 SMART LRR_sd22_2 174 206 - -
Seca4g11081 1287 FunFam Exocyst complex component SEC6 1095 1268 - -
Seca4g11081 1287 Pfam Exocyst complex component Sec6 940 1267 IPR010326 GO:0000145|GO:0006887
Seca4g11081 1287 Gene3D Phosphorylase Kinase; domain 1 406 519 - -
Seca4g11081 1287 Pfam Leucine Rich Repeat 152 172 IPR001611 GO:0005515
Seca4g11081 1287 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515
Seca4g11081 1287 SUPERFAMILY L domain-like 91 348 - -
Seca4g11081 1287 Gene3D Ribonuclease Inhibitor 33 190 IPR032675 -
Seca4g11081 1287 Gene3D - 938 1088 - -
Seca4g11081 1287 FunFam Leucine-rich repeat receptor protein kinase MSP1 406 519 - -
Seca4g11081 1287 FunFam Nuclear pore complex protein NUP107 30 193 - -
Seca4g11081 1287 ProSitePatterns Tyrosine protein kinases specific active-site signature. 565 577 IPR008266 GO:0004672|GO:0006468
Seca4g11081 1287 FunFam Calmodulin-binding receptor kinase CaMRLK 199 312 - -
Seca4g11081 1287 Gene3D Ribonuclease Inhibitor 191 290 IPR032675 -
Seca4g11081 1287 Gene3D Ribonuclease Inhibitor 291 363 IPR032675 -
Seca4g11081 1287 ProSiteProfiles Leucine-rich repeat profile. 128 151 IPR001611 GO:0005515
Seca4g11081 1287 PRINTS Leucine-rich repeat signature 153 166 - -
Seca4g11081 1287 PRINTS Leucine-rich repeat signature 222 235 - -
Seca4g11081 1287 ProSitePatterns Protein kinases ATP-binding region signature. 447 469 IPR017441 GO:0005524
Seca4g11081 1287 Pfam Protein kinase domain 447 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g11081 1287 Gene3D Transferase(Phosphotransferase) domain 1 520 713 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11081 Seca-Chr4 249123471 249133924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11081 64 613 Receptor kinase-like Gene Family AT4G08850 35.241 1.12e-102 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca4g11081 Sec6 1.1e-73 CL0295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11081 - K06110 vun:114165534 1033.86