Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11057 ATGGCCACTACCACCACCTTTTGCCTCCAAGAAATGGAGCTGCTCCATATGGCCCAAGCCCAAGTTTCACAGGCCAAGAATTGGGTTGGGAACTCTGTGAGATTGCATGGCTTAGGAAGCCTGCAGAGCCTTAATTCAGATCAAAGTGGTGTTCATAACCAAACTAGTACTACTGTTGTGGCTCTAAGAGATTGTGCCGAGCTCTATGAGGAGAGTGAGTCTAGGCTCTCTCACATGGTCTCTGACAATAGTAATTACACCAAAGAAGATGCACTTACTTGGGTAAGTGCTGTGATGACAAACCACAGGACTTGTTTGGATGGATTGCAGGACAAAGGGTATGTTGAAGCTCATGATCAGGTTTTGGGTAGAAACTTGACCATGTTGCTTGGGCAAGCTCTTGTTTTGTATTCAAAGCACAAAGGCAAAGGCAAAGAATTAGTTCCAGGACCACCTCAGAGAACAGTATCCAAAGCAAATGCTGGTCTCTTAGAATCATGGAGTCCAGCAAGCTACAAGGCAGACTTCACAGTGGCACAGGATGGTTCAGGCAGCCACAGAACAATCAAAGAAGCAGTAGATGCACTGGTTTCAATGGGGCACAACCGTCCTGGTAGGGCAGTTATACATGTAAAATCAGGGGTCTACCATGAGAAAGTTGAGATTGGAAGCAAGCTACACAATGTGATGTTTGTAGGAGATGGCATAGACAGAACTATCATCACTGGCAATAGAAATGTTGTTCAGGGCTCTTCCACTCTTGGCTCTGCCACATTTGATGTATCTGGGGATGGATTTTGGGCTAGAGATATGACATTTGAGAACACTGCAGGCCCTGAAAAGCACCAAGCAGTGGCACTTAAGGTAAGCTCTGACTTATCAGTGTTCTATAGGTGCAGCTTCAAAGGTTACCAAGACACTCTTTATGTGCACTCAAATCGCCAATTCTACCGTGATTGTCACATATATGGCACTGTGGATTTCATATTTGGGGATGCAACAGTGGTGTTACAAAACTGTGACATCTTTGTGAGGAAACCAATGGGTCATCAATCTAACTTCATCACAGCACAAGGAAGAGATGATCCTAACAAACCAACTGGGATTTCAATCATTAATAGCAGGGTTAGGCCTGCATCTGAATTTGTCATGTCAAAGGATTCTTCCAAGACCTTCTTAGGCAGGCCTTGGAAAAGGTACTCAAGGACTGTGTTTCTGAAAACTGATTTAGATGGGTTGATACACCCAAGAGGGTGGAGTGAATGGGCTGGAAATTTTGCACTCTCAACTTTGTACTATGGAGAGTATATGAACTCAGGAAATGGTGCATCTACCCAGAATAGAGTGAACTGGCCGGGTTTCCATGTGCTGAGGAGTGCTAGTGAGGCCTCACCCTTTACAGTGAATCAGTTTCTGCAAGGGGAAAGATGGATTCCAGCTTCGGGGGTGCCTTTTTGGTCTGGAATTTAA 1470 0.449 MATTTTFCLQEMELLHMAQAQVSQAKNWVGNSVRLHGLGSLQSLNSDQSGVHNQTSTTVVALRDCAELYEESESRLSHMVSDNSNYTKEDALTWVSAVMTNHRTCLDGLQDKGYVEAHDQVLGRNLTMLLGQALVLYSKHKGKGKELVPGPPQRTVSKANAGLLESWSPASYKADFTVAQDGSGSHRTIKEAVDALVSMGHNRPGRAVIHVKSGVYHEKVEIGSKLHNVMFVGDGIDRTIITGNRNVVQGSSTLGSATFDVSGDGFWARDMTFENTAGPEKHQAVALKVSSDLSVFYRCSFKGYQDTLYVHSNRQFYRDCHIYGTVDFIFGDATVVLQNCDIFVRKPMGHQSNFITAQGRDDPNKPTGISIINSRVRPASEFVMSKDSSKTFLGRPWKRYSRTVFLKTDLDGLIHPRGWSEWAGNFALSTLYYGEYMNSGNGASTQNRVNWPGFHVLRSASEASPFTVNQFLQGERWIPASGVPFWSGI. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11057 489 Gene3D - 169 489 IPR012334 -
Seca4g11057 489 PANTHER PECTINESTERASE 52 479 - -
Seca4g11057 489 NCBIfam pectinesterase inhibitor domain 56 128 IPR006501 GO:0004857
Seca4g11057 489 Pfam Pectinesterase 175 475 IPR000070 GO:0030599|GO:0042545
Seca4g11057 489 Pfam Plant invertase/pectin methylesterase inhibitor 49 128 IPR006501 GO:0004857
Seca4g11057 489 SUPERFAMILY Pectin lyase-like 172 488 IPR011050 -
Seca4g11057 489 CDD PMEI-like_4 60 140 - -
Seca4g11057 489 ProSitePatterns Pectinesterase signature 2. 322 331 IPR033131 -
Seca4g11057 489 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 137 IPR035513 -
Seca4g11057 489 SMART PMEI_2 1 136 IPR006501 GO:0004857
Seca4g11057 489 FunFam Pectinesterase 169 489 - -
Seca4g11057 489 Gene3D Invertase/pectin methylesterase inhibitor family protein 12 139 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11057 Seca-Chr4 248876943 248879870 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11057 2 489 Carbohydrate Esterase AT3G60730 54.776 0.0 577
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11057 K01051 - gmx:100792852 780.785