Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11056 CATGGAGAGGAAGAACATTTTCCACAAGTTGACTTCATCTTTGGTAATGCTGCTGTGGTGTTCCAAAATTGTAACCTCTTTGCAAGAAACCCTCCAAACAAAGTTAACACAATCACTGCTCAAGGCAGAATCGATCCAAATCAGAACACTGGCATTTCCATTCACAGTTGCAGAGTGACAGCTGCCTCAGATTTGAAACCAGTTCAAGGCTCAGTAAAAACTTACCTTGGAAGACCTTGGCAACAGTACTCAAGGACAGTATTCATGAAGACATATCTTGATAGTTTGATCAATCCAGCAGGTTGGATGGAATGGAGTGCTAACTTTGCCTTAAGCACTCTGTACTATGGAGAGTACATGAACACAGGACCAGGTTCTTCAACCGCAAACAGAGTTAACTGGTCAGGATATCATGTCATTACCAGCGCTTTTGAAGCCTCAAAATTCATCGTTGCTAATTTTATTACTGGAAACTCGTGGCTACCATCCACCCGTGTGCCCTTCACCTCTACTTTATAA 519 0.4239 HGEEEHFPQVDFIFGNAAVVFQNCNLFARNPPNKVNTITAQGRIDPNQNTGISIHSCRVTAASDLKPVQGSVKTYLGRPWQQYSRTVFMKTYLDSLINPAGWMEWSANFALSTLYYGEYMNTGPGSSTANRVNWSGYHVITSAFEASKFIVANFITGNSWLPSTRVPFTSTL. 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11056 172 SUPERFAMILY Pectin lyase-like 9 171 IPR011050 -
Seca4g11056 172 PANTHER PECTINESTERASE 9 162 - -
Seca4g11056 172 Pfam Pectinesterase 9 158 IPR000070 GO:0030599|GO:0042545
Seca4g11056 172 Gene3D - 8 172 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11056 Seca-Chr4 248866122 248868606 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11056 10 172 Carbohydrate Esterase AT2G45220 71.779 1.59e-81 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11056 K01051 - vvi:100255703 299.671