Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11055 ATGAAGAAAAGGAAGAGCTGCAGCACAACTCTCACTAACCTTGAGACATGCAAAGTTGGGTTCTATGAGCTTGGTGTTCAAGACTATGTGCTTCCTCTGATGTCCAACAATATTACTAAGTTTCTAAGCAACAATCTGGTTCTCAACAAAGTTCAATATCAAGAACCAAGTTACAGAGATGGGTTCCCAACATGGGTTAAGCCAGGTGACCGCAAGTTGTTGCAGGCATCTTCTCCAGCTTCTCAGGCTAATGTAGTTGTGGTGAAAGATGGCTCTGGAAAGTACACAACTGTCAGTGCAGCCATAAATGTTGCTCCACAAAGTAGCAGTGGAAGGTATGTGATATACATGAGGGCAGGAATATATAATGAGCAAGTTGAGATCAAGGCAAAGAATATAATGTTGGTGGGAGATGGCATTGGAAAGACCATAATCACAGGTAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCATTCTGCAACTATTGCTGTTATTGGGGATGGATTTATTGCACAAGATATCACATTCAGGAACACTGCTGGTGCAGCAAACGACCAAGCTGTTGCATTGCATTCTAGATCTGACTTATCAGTCTTTTATAGATGCAGCTTTGAAGGTTACCAAGACACACTGTATGTGTACTTTGACAGACAATTCTATAGGGATTGTGACATCTATGGTACAGTTGATTTTATCTTTGGCAATGTTGTTGTGGTGTTCCAAAATTGCAACCTCTTTGCAAGAAACGATCGAAATCAGAACACTGGCATTTCCATTCACAATTGCAGAGTGACAGCTGCCTCAGATTTGAAACCAGTTCAACGCTCAGTAAAAACTTACCTTGGAAGGCCTTGGCAACAGTACTCAAGGACAATATTCATGAAAACATATCTTTATAGTTTGATCAATCCAGCAGGTTGGATGGAATAG 933 0.4137 MKKRKSCSTTLTNLETCKVGFYELGVQDYVLPLMSNNITKFLSNNLVLNKVQYQEPSYRDGFPTWVKPGDRKLLQASSPASQANVVVVKDGSGKYTTVSAAINVAPQSSSGRYVIYMRAGIYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFHSATIAVIGDGFIAQDITFRNTAGAANDQAVALHSRSDLSVFYRCSFEGYQDTLYVYFDRQFYRDCDIYGTVDFIFGNVVVVFQNCNLFARNDRNQNTGISIHNCRVTAASDLKPVQRSVKTYLGRPWQQYSRTIFMKTYLYSLINPAGWME. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11055 310 FunFam Pectinesterase 4 81 310 - -
Seca4g11055 310 SUPERFAMILY Pectin lyase-like 78 309 IPR011050 -
Seca4g11055 310 Gene3D - 79 310 IPR012334 -
Seca4g11055 310 PANTHER PECTINESTERASE 6 310 - -
Seca4g11055 310 Pfam Pectinesterase 84 310 IPR000070 GO:0030599|GO:0042545
Seca4g11055 310 ProSitePatterns Pectinesterase signature 2. 226 235 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11055 Seca-Chr4 248851651 248852697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11055 8 310 Carbohydrate Esterase AT2G45220 66.981 9.41e-154 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11055 K01051 - gmx:100783428 513.072