Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11054 ATGTCCAACAATGTTACTAAGTTGCTAAGCAACAATCTGGCTCTCAACAAAGAATCTTCTCTAGCTTCTCAGGCTAATGTAGTTGTGGCGAAAGATGGCTCTGGAAAGTACACAACTGTCAGTGTAGCTATAAATGCTGCTCCACAAAGTAGCAGTGGAAGGTATGTGATATACGTGAAGGCGGGAATATACAATGAGCAAGTTGAGATCAAGGCAAAGAATATAATGTTGGTGGGAGATGGCATTGGAAAGACCATAATCACAGGTAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGTTCTGCCACTGTTGGTAAGAGACTGTTGTGGTGTGAGATCTATGTCACAATTGACTTCATCTTTGATAATGCTGCTGTGGTGTTCCAAAATTGTAACCTTTTTGCAAGAAACCCTCCAAACAAAGTTAACACAATCACTGCTCAAGGCAGAACCGATCCAAATCAGAATACTGGCATTTCCATTCACAGTTGCAGAGTGACAGCTGCCTCAGATTTGAAACCAGTTCAAGGCTCAGTAAAAACTTACCTTGGAAGCCCTTGGCAACAGTACTCAAGGACAGTATTCATGAAGACATATCTTGATAGTTTGATCAATCCAACAGGTTGGATGGAATGA 639 0.421 MSNNVTKLLSNNLALNKESSLASQANVVVAKDGSGKYTTVSVAINAAPQSSSGRYVIYVKAGIYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVGKRLLWCEIYVTIDFIFDNAAVVFQNCNLFARNPPNKVNTITAQGRTDPNQNTGISIHSCRVTAASDLKPVQGSVKTYLGSPWQQYSRTVFMKTYLDSLINPTGWME. 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11054 212 Pfam Pectinesterase 112 212 IPR000070 GO:0030599|GO:0042545
Seca4g11054 212 Pfam Pectinesterase 26 106 IPR000070 GO:0030599|GO:0042545
Seca4g11054 212 ProSitePatterns Pectinesterase signature 1. 51 70 IPR018040 -
Seca4g11054 212 Gene3D - 110 212 IPR012334 -
Seca4g11054 212 Gene3D - 21 108 IPR012334 -
Seca4g11054 212 PANTHER PECTINESTERASE 112 212 - -
Seca4g11054 212 SUPERFAMILY Pectin lyase-like 20 211 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11054 Seca-Chr4 248822227 248826052 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11054 1 212 Carbohydrate Esterase AT2G45220 45.172 7.96e-69 217
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11054 K01051 - gmx:100783428 305.064