Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11052 GCATCTTCTCCAGCTTCTACGGCTAATGTAGTTGTGGCAAAAGATGGCTCTGGAAAGTACACAACTGTCAGTGCAGCCATAAATGTTGCACCACAAAGTAGCAGTGGAAGGTATGTGATATATGTGAAGGCAGGGACATACAATGAGCAAGTTGAGATAAAGGCAAAGAATATAATGTTGGTTGGAGATGGCATTGGAAAGACCATAATCACAGGTAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGATCCGCCACTGTTGCTGTTGTTGGGGATGGATTTATAGCTCAAGATATCACATTCAGGAACACTGCTGGTGCAGCAAACCACCAAGCTGTTGCATTGCGTTCTGGATCTGACTTATCTGTCTTTTATAGATGCAGTTTTGAAGGTTATCAAGACACACTGTATGTGCACTCTGAGAGACAATTCTATAGGGAGTGTGACATCTATGGTACAGTTGATTTCATTTTTGGTAATGCTGCTGTGGTGTTCCAAAATTGCAACCTCTTTGCAAGAAACCCTCCAAACAAAGTTAACACAATCACTGCTCAAGGAAGAACCGATCCAAATCAGAACACTGGGATTTCCATTCACAATTGCAGAGTGATAGCTGCCTCAGATTTGAAACCATCTCAAGGCTCAGTAAAAACTTACCTTGGAAGACCTTGGCAACAGTACTCAAGGACAGTATTCATGAAGACATATCTTGATAGTTTGATCAATCCAGCAGGTTGGATGGAATGGAGTGGTAATTTTGCCTTAAGCACTCTGTACTATGGAGAGTACATGAACACAGGACCAGGTTCTTCAACCACAAACAGAGTTAACTGGTCAGGATATCATGTCATTACCAGCGCTTCTGAAGCCTCAAAATTCACTGTTGCTAATTTTATTGCTGGAAACTCGTGGCTACCATCCACCCGTGTGCCCTTCACCTCTACTTTATAA 954 0.4277 ASSPASTANVVVAKDGSGKYTTVSAAINVAPQSSSGRYVIYVKAGTYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNLFARNPPNKVNTITAQGRTDPNQNTGISIHNCRVIAASDLKPSQGSVKTYLGRPWQQYSRTVFMKTYLDSLINPAGWMEWSGNFALSTLYYGEYMNTGPGSSTTNRVNWSGYHVITSASEASKFTVANFIAGNSWLPSTRVPFTSTL. 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11052 317 ProSitePatterns Pectinesterase signature 2. 151 160 IPR033131 -
Seca4g11052 317 FunFam Pectinesterase 3 317 - -
Seca4g11052 317 Gene3D - 4 317 IPR012334 -
Seca4g11052 317 Pfam Pectinesterase 9 303 IPR000070 GO:0030599|GO:0042545
Seca4g11052 317 SUPERFAMILY Pectin lyase-like 3 316 IPR011050 -
Seca4g11052 317 ProSitePatterns Pectinesterase signature 1. 34 53 IPR018040 -
Seca4g11052 317 SMART complete 42 219 IPR006633 -
Seca4g11052 317 PANTHER PECTINESTERASE 8 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11052 Seca-Chr4 248663682 248664812 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11052 9 317 Carbohydrate Esterase AT2G45220 75.405 5.02e-172 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11052 K01051 - gmx:100783964 575.089