Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11051 ATGGAACCTATTCGCTTGCTCGTTACTCTTCTTCTATTCATTCCTTTTTTGTTATCCTCTTTGGTTTCTGGCTATTCCTATAATGATGTCAAGCTTTGGTGCAACCAAACCCCCAACCCTCAACCATGTGAGTATTTCTTGGGTAATAATCCCACACACCAACATAAACCCATCAAGGAAAAAACTGATTTCCTCAAACTGTCATTGCAACTTGCTCAAGAGAGAGCACTCATAGGCCATGCAAACACTCTTTCACTTGGTTCTAAATGCCGTAACCCAAGTGAAAAAGCTGCTTGGTCTGATTGCATTGAACTTTATGAGCAAACCATCCACAAGCTCAACAAAACCTTAGACCCAAACACCAAGTGCTCTCAAGTTGATACTCAAACATGGCTCAGCACAGCTCTCACTAACCTTGAGACATGCAAAGCTGGGTTCTATGAGCTTGGTGTTCAAGACTATGTACTGCCTCTTATGTCCAACAATGTTACTAAGTTGCTAAGCAACACATTGGCCCTTAACAAGGTTCAATATCAAGAACCAAGTTACAGAGATGGGTTCCCAACATGGGTCAAACCAGGAGACCGCAAGTTGTTGCAGGCAGCTTCTCCAGCTTCTCAGGCTAATGTAGTTGTGGCGAAAGATGGCTCTGGAAAGTACACAAGTGTCACTGCAGCCATAAATGCTGCACCACAAAGTAGCAGTGGAAGGTATGTGATATATGTGAAGGCAGGGACATACAATGAGCAAGTTGAGATAAAGGCAAAGAATATAATGTTGGTTGGAGATGGCATTGGAAAGACCATAATCACAGGTAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGATCTGCCACTGTTGCTGTTGTTGGGGATGGATTTATTGCTCAAGATATCACATTCAGGAACACTGCTGGTGCAGCAAACCACCAAGCTGTTGCATTGCGTTCTGGATCTGACTTATCTGTCTTTTATAGATGCAGCTTTGAAGGTTACCAAGACACACTGTATGTGCACTCTGAGAGACAATTCTATAGGGAGTGTGACATCTATGGTACAGTTGATTTCATTTTTGGTAATGCTGCTGTGGTGTTCCAAAATTGCAACCTCTTTGCAAGAAACCCTCCAAACAAAGTTAACACAATCACTGCTCAAGGAAGAACTGATCCAAACCAGAACACTGGCATTTCCATTCACAATTGCAGAGTGACAGCTGCCTCAGATTTGAAACCAGTTCAAGGCTCAGTAAAAACTTACCTTGGAAGACCGTGGCAACAGTACTCAAGAACAGTATTCATGAAGACATATCTTGATAGTTTGATCAATCCAGCAGGTTGGTTGGAATGGAGTGGTAACTTTGCCTTAAGCACTCTGTACTATGGAGAGTACATGAACACAGGACCAGGTTCTTCAACCGCAAACAGAGTTAACTGGTCAGGATATCATGTCATTACCCGCGCTTCTGAAGCCTCAAAATTCACCGTTGCTAATTTTATTGCTGGCAACTCCTGGCTACCATCCACCCGTGTGCCCTTCACCTCTACTTTATAA 1554 0.4331 MEPIRLLVTLLLFIPFLLSSLVSGYSYNDVKLWCNQTPNPQPCEYFLGNNPTHQHKPIKEKTDFLKLSLQLAQERALIGHANTLSLGSKCRNPSEKAAWSDCIELYEQTIHKLNKTLDPNTKCSQVDTQTWLSTALTNLETCKAGFYELGVQDYVLPLMSNNVTKLLSNTLALNKVQYQEPSYRDGFPTWVKPGDRKLLQAASPASQANVVVAKDGSGKYTSVTAAINAAPQSSSGRYVIYVKAGTYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGAANHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRECDIYGTVDFIFGNAAVVFQNCNLFARNPPNKVNTITAQGRTDPNQNTGISIHNCRVTAASDLKPVQGSVKTYLGRPWQQYSRTVFMKTYLDSLINPAGWLEWSGNFALSTLYYGEYMNTGPGSSTANRVNWSGYHVITRASEASKFTVANFIAGNSWLPSTRVPFTSTL. 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11051 517 FunFam Pectinesterase 25 176 - -
Seca4g11051 517 SUPERFAMILY Pectin lyase-like 203 516 IPR011050 -
Seca4g11051 517 CDD PMEI-like_3 32 175 - -
Seca4g11051 517 ProSitePatterns Pectinesterase signature 1. 234 253 IPR018040 -
Seca4g11051 517 SMART PMEI_2 25 173 IPR006501 GO:0004857
Seca4g11051 517 Pfam Plant invertase/pectin methylesterase inhibitor 30 173 IPR006501 GO:0004857
Seca4g11051 517 Gene3D - 204 517 IPR012334 -
Seca4g11051 517 NCBIfam pectinesterase inhibitor domain 10 175 IPR006501 GO:0004857
Seca4g11051 517 Pfam Pectinesterase 209 503 IPR000070 GO:0030599|GO:0042545
Seca4g11051 517 SMART complete 242 419 IPR006633 -
Seca4g11051 517 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Seca4g11051 517 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 176 IPR035513 -
Seca4g11051 517 FunFam Pectinesterase 203 517 - -
Seca4g11051 517 PANTHER PECTINESTERASE 15 507 - -
Seca4g11051 517 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 29 176 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11051 Seca-Chr4 248531784 248533460 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11051 1 517 Carbohydrate Esterase AT2G45220 67.954 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11051 K01051 - gmx:100783964 920.613