Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11049 ATGAAAGCTTTTTGCTTCCTTGTAACACTTTTGCTTCCCTTTCTACTTTCCTCTTTGGTTTATGGTTATTCCTACAATGATGTCAAGCTTTGGTGCAACCAAACCCCAAACCCTCAACCATGTGAGTATTTCTTAAGCAATAACCCTACTTACCAACACAAACTCATCACACAGAAAGCTGATTTCTTCAAGCTTTCATTGCAACTTGCTCAAGAGAGAGCACTCAAAGGCCATGCAAACACTCTTTCACTTCGCTCAAAATGCAATAACCCACGTGTAACTGCTGCTTGGGCTGATTGTGTTGAGCTTTATGAGCAAACCATCCTTAAACTAAACAAAACCTTAGACCCAAACACCAAGTGCTCTCAAGTTGATGCACAAACATGGCTCAGCACAGCACTCACTAACCTTGAGACATGCAAAGCTGGATTCTATGAGCTTGGTGTTCAAGACTATGTGCTCCCTATGATGTCCAACAATGTTACTAAGTTGGTAAGTAACACCTTGGCTCTTAACAAGGTTCAATATCAACAACCAAGCTACAAAGATGGGTTCCCAACATGGGTCAAACCAGGTGACAGGAAGTTATTGCAAGCATCTTCTCCAGCTTCTAGAGCTAATGTAGTGGTGGCAAAAGATGGTTCTGGAAAATACACAACTGTTAGTGCAGCTATAAATGCTGCACCAAAGAGTAGTGGAAGGTATGTGATACATGTGAAGGCAGGGATATACAATGAACAAGTTGAGATAAAAGCAAAGAATATAATGTTAGTAGGAGATGGTATTGGAAAGACCATTATCACAGGTAGCAAAAGTGTTGGAGGAGGCACCACAACCTTCCGTTCTGCTACTGTTGCTGTTGTTGGGGATGGATTTATTGCTCAAGATATCACATTTAGGAACACTGCTGGTGCAAAAAACCACCAAGCTGTTGCATTGCGTTCTGGATCTGACTTATCAGTCTTTTATAGATGCAGCTTTGAAGGTTACCAAGACACATTGTATGTGCACTCTGAGAGGCAATTCTATAGGGATTGTAACATCTATGGTACTGTTGACTTCATCTTTGGTAATGCTGCTGTTGTGTTGCAAAATTGTAACATATTTGCAAGAAACCCTCCAAACAAGGTCAACACAATTACTGCTCAAGGAAGAACTGATCCAAATCAAAACACTGGTATTTCTATTCACAATTGTAGGGTTACAGCTGCCTCAGATTTGAAACCAGTTCAAAGCTCTGTGAGGACTTATCTTGGAAGACCTTGGAAGCAATACTCAAGGACAGTATTCATGAAGACATATCTTGATAGTTTGATCAATCCAGCAGGTTGGATGGAATGGAGTGGTAACTTTGCCTTAAGCACTCTGTACTATGGAGAGTACATGAACACAGGACCAGGTTCTTCAACTAGGAGTCGAGTTAAATGGCCAGGTTATCGTGTTATTACCAGTGCTTCTGAAGCCTCAAAATTCACCGTTGCAAATTTCATTGCAGGAAACTCATGGTTACCTTCCACTAAAGTGCCTTTCACGTCTAGTCTTTAA 1545 0.4104 MKAFCFLVTLLLPFLLSSLVYGYSYNDVKLWCNQTPNPQPCEYFLSNNPTYQHKLITQKADFFKLSLQLAQERALKGHANTLSLRSKCNNPRVTAAWADCVELYEQTILKLNKTLDPNTKCSQVDAQTWLSTALTNLETCKAGFYELGVQDYVLPMMSNNVTKLVSNTLALNKVQYQQPSYKDGFPTWVKPGDRKLLQASSPASRANVVVAKDGSGKYTTVSAAINAAPKSSGRYVIHVKAGIYNEQVEIKAKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAVVGDGFIAQDITFRNTAGAKNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRDCNIYGTVDFIFGNAAVVLQNCNIFARNPPNKVNTITAQGRTDPNQNTGISIHNCRVTAASDLKPVQSSVRTYLGRPWKQYSRTVFMKTYLDSLINPAGWMEWSGNFALSTLYYGEYMNTGPGSSTRSRVKWPGYRVITSASEASKFTVANFIAGNSWLPSTKVPFTSSL. 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11049 514 FunFam Pectinesterase 201 514 - -
Seca4g11049 514 ProSitePatterns Pectinesterase signature 2. 348 357 IPR033131 -
Seca4g11049 514 SMART PMEI_2 23 171 IPR006501 GO:0004857
Seca4g11049 514 PANTHER PECTINESTERASE 15 506 - -
Seca4g11049 514 Pfam Pectinesterase 207 500 IPR000070 GO:0030599|GO:0042545
Seca4g11049 514 SUPERFAMILY Pectin lyase-like 201 511 IPR011050 -
Seca4g11049 514 ProSitePatterns Pectinesterase signature 1. 231 250 IPR018040 -
Seca4g11049 514 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 174 IPR035513 -
Seca4g11049 514 NCBIfam pectinesterase inhibitor domain 6 173 IPR006501 GO:0004857
Seca4g11049 514 Pfam Plant invertase/pectin methylesterase inhibitor 28 171 IPR006501 GO:0004857
Seca4g11049 514 CDD PMEI-like_3 30 173 - -
Seca4g11049 514 Gene3D Invertase/pectin methylesterase inhibitor family protein 23 174 IPR035513 -
Seca4g11049 514 Gene3D - 202 514 IPR012334 -
Seca4g11049 514 SMART complete 239 417 IPR006633 -
Seca4g11049 514 FunFam Pectinesterase 23 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11049 Seca-Chr4 248509226 248510871 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11049 10 514 Carbohydrate Esterase AT2G45220 68.182 0.0 727
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11049 K01051 - gmx:100783428 929.858