Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11047 ATGGCGTCACTTCGTTTTCTAGCAACCCTTTTAATCATCCCTTTTCTATTTTCCTCTAATGTTTCCGGTTACTCAATGAATTTCATCAAATCATGGTGCAACCAAACACCTTATCCTCAGCCATGTGAGTACTATTTGAGCAACAATGCTTTCAACAAACCCATTAAAAATAAGTCCGATTTTTTCAAAGTTTCCCTTCAACTTGCCATAGAGAGAGCACAAAGGGGCCAAATAAACACACATTCACTAGGCCCAAAGTGTAGGAATGCACATGAAAGAGCTGCATGGGCTGATTGCCTTGAGCTCTATGAGCACACTATCCAAAGGCTCAACAAAACCATAGACCCTAACACTAAATGTTCCCAAACCGATGCTCAAACTTGGCTTAGCACAGCTCTCACTAACCTTGAGACTTGTAGAGCTGGGTTCTATGACCTTGGGGTTCAAAATTATTTATTGCCCTTGTTGTCCAATAATGTCACTCAATTGTTAAGTAACACCCTTTCCCTTAACAAGGTTCCTTTTCAACAACCTAGTTATAAAGATGGGTTCCCAACATGGGTTAAGCCTGGTGATAGGAAGTTGTTGCAAACATCTTCAGCTGCTTCTAAGGCCAATGTGGTTGTGGCTAAAGATGGGTCTGGTAAGTACACAACAGTGAAGGCTGCAGTAGATGCTGCACCAAAGAGTAGTAGTGGGAGGTATGTGATATATGTGAAGGCAGGAACATACAATGAACAAGTTGAGGTAAAAGGAAAGAATATAATGTTGGTTGGAGATGGTATTGGAAAGACCATAATTACAGGTAGCAAAAGTGTTGGAGGAGGCACCACCACCTTCCGTTCAGCCACAGTTGCTGCTGTCGGTGATGGATTCATTGCTCAAGACATCACATTTAGGAACACTGCAGGAGCAGCAAATCACCAAGCTGTTGCATTTCGTTCTGGATCTGATTTATCAGTGTTTTATAGATGTAGCTTTGAAGGTTATCAAGACACACTATATGTTCATTCAGAGAGGCAATTTTATAGAGACTGTGACATATATGGCACAGTTGATTTTATCTTTGGTAATGCTGCTGTGGTTTTGCAAAATTGCAACATCTATGCAAGGAACCCACCTCAAAAAACCATCACAGTAACTGCTCAAGGTAGAACTGATCCAAACCAAAACACTGGAATCATCATTCACAACTCTAAGGTTACTGGTGCCTCAGGTTTCAGTTCAGGTTCTGTTAAGTCATATCTTGGAAGGCCTTGGCAAAAATACTCAAGAACAGTGTTCATGAAAACTTTCCTTGATAGTTTGATAAACCCAGCTGGTTGGTTGGAATGGAGTGGTAATTTTGCTTTGGATACTTTGTACTATGCAGAGTATGCAAACACAGGTCCAGGTTCTTCCACTGCTAACAGAGTCAAGTGGAAGGGTTACCATGTTCTTACTAGTGCATCTGATGCCTCACAATTCACAGTTGGGAACTTTATTGCTGGTAATTCATGGTTACCAAGCACTGGTGTTCCTTTCACCTCAGGGCTTTAA 1539 0.4133 MASLRFLATLLIIPFLFSSNVSGYSMNFIKSWCNQTPYPQPCEYYLSNNAFNKPIKNKSDFFKVSLQLAIERAQRGQINTHSLGPKCRNAHERAAWADCLELYEHTIQRLNKTIDPNTKCSQTDAQTWLSTALTNLETCRAGFYDLGVQNYLLPLLSNNVTQLLSNTLSLNKVPFQQPSYKDGFPTWVKPGDRKLLQTSSAASKANVVVAKDGSGKYTTVKAAVDAAPKSSSGRYVIYVKAGTYNEQVEVKGKNIMLVGDGIGKTIITGSKSVGGGTTTFRSATVAAVGDGFIAQDITFRNTAGAANHQAVAFRSGSDLSVFYRCSFEGYQDTLYVHSERQFYRDCDIYGTVDFIFGNAAVVLQNCNIYARNPPQKTITVTAQGRTDPNQNTGIIIHNSKVTGASGFSSGSVKSYLGRPWQKYSRTVFMKTFLDSLINPAGWLEWSGNFALDTLYYAEYANTGPGSSTANRVKWKGYHVLTSASDASQFTVGNFIAGNSWLPSTGVPFTSGL. 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11047 512 PANTHER PECTINESTERASE 16 502 - -
Seca4g11047 512 ProSitePatterns Pectinesterase signature 2. 348 357 IPR033131 -
Seca4g11047 512 Pfam Plant invertase/pectin methylesterase inhibitor 27 170 IPR006501 GO:0004857
Seca4g11047 512 Gene3D Invertase/pectin methylesterase inhibitor family protein 24 173 IPR035513 -
Seca4g11047 512 SMART PMEI_2 24 170 IPR006501 GO:0004857
Seca4g11047 512 FunFam Pectinesterase 24 173 - -
Seca4g11047 512 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 173 IPR035513 -
Seca4g11047 512 SUPERFAMILY Pectin lyase-like 200 511 IPR011050 -
Seca4g11047 512 Gene3D - 200 512 IPR012334 -
Seca4g11047 512 ProSitePatterns Pectinesterase signature 1. 231 250 IPR018040 -
Seca4g11047 512 NCBIfam pectinesterase inhibitor domain 6 173 IPR006501 GO:0004857
Seca4g11047 512 CDD PMEI-like_3 31 172 - -
Seca4g11047 512 Pfam Pectinesterase 206 498 IPR000070 GO:0030599|GO:0042545
Seca4g11047 512 FunFam Pectinesterase 200 512 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11047 Seca-Chr4 248469176 248473441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11047 1 512 Carbohydrate Esterase AT2G45220 67.573 0.0 736
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11047 K01051 - gmx:100782892 910.983