Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11044 ATGCGATTCAAGCTCGGCAAGCGCGTGATCCGGGTCACCAGATGGATCTTCAGGAGGTTCCGGACGCGACCCAGATACCATCGTCTGGGTTCCTCGCCGGCGAAGAACCCCATGATGACGAAGCTTCTCGCCTGGGGTCGCAAGCTAACGAGGGGAGCAAGGTCCATCTGCGCCAGAAACGGGTCAAGTTACATTCCGATTGGATCCGACCCGGTTCAGGACAAGGCTCCGGCGGTGCCAAAGGGGCACTTGGCGGTGTACGTGGGGCAGAAGGACGACGAGTTTCACCGGGTTCTGGTGCCGGTGGTTTACTTCAACCACCCTTTGTTTAGTGAGCTGCTACGAGAAGCGGAGAAGGAGTACGGGTTTCACCACCCGGGTGGGATCACGATCCCTTGCCGGGTCACCGAGTTTGAACGAGTCAAGACCCGAATTGCATCCGGGTCGGGTGTCAGCAACAGCGCAAGGAGATTGGCGTGGCGGCGAAATTATTGA 495 0.5859 MRFKLGKRVIRVTRWIFRRFRTRPRYHRLGSSPAKNPMMTKLLAWGRKLTRGARSICARNGSSYIPIGSDPVQDKAPAVPKGHLAVYVGQKDDEFHRVLVPVVYFNHPLFSELLREAEKEYGFHHPGGITIPCRVTEFERVKTRIASGSGVSNSARRLAWRRNY. 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11044 164 Pfam Auxin responsive protein 60 142 IPR003676 GO:0009733
Seca4g11044 164 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 59 140 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11044 Seca-Chr4 248449065 248449559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11044 77 156 Calmodulin-binding Proteins AT3G43120 45.000 6.25e-17 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11044 K14488 - gmx:100796005 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11044 4 248449065 248449559 Seca4g11044 4 248449065 248449559 ECH