Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11042 ATGTCCGCCTCATCTACAACTTCCTTTTCACCGGACCAACACCTCTCTCCCTCCGACCAGCTCTGTTATGTCCAATGCAACTTCTGTGACACTGTCCTCGCGGTGAGTGTTCCTTGCAGCAGTTTGTTCAAGACTGTCACAGTGAGATGTGGTCATTGCACCAACCTTCTCTCAGCCAACATGCGTGGCCTTCTTCTTCCTTCTGCTAATCAGCTTCACCTTGGCCACTCCTTCTTCACTCCTCAAAATCTTCTCGAGGAGATTCGGAATGCACCTTCAGCAAATATGATGATGAATCAGATGCCAAATCCAAATGATTTGATGATGAGCAACATGCGAGTAGGGCCAGAAGAAACCCCTAAACCTCCACCAGCTAATAGACGTGAGATTTTTTTTTTTTTTATCTAA 408 0.4608 MSASSTTSFSPDQHLSPSDQLCYVQCNFCDTVLAVSVPCSSLFKTVTVRCGHCTNLLSANMRGLLLPSANQLHLGHSFFTPQNLLEEIRNAPSANMMMNQMPNPNDLMMSNMRVGPEETPKPPPANRREIFFFFI. 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11042 135 PANTHER PROTEIN YABBY 6-RELATED 4 123 IPR006780 GO:0007275
Seca4g11042 135 Pfam YABBY protein 17 104 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11042 Seca-Chr4 248374323 248377427 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11042 18 65 C2C2-YABBY Transcription Factor Family AT2G26580 68.750 5.12e-20 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca4g11042 YABBY 3.2e-29 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11042 K25796 - gmx:100781267 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g11042 4 248374323 248377427 Seca4g11042 4 248374323 248377427 ECH