Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11033 ATGACTATAGAGGAGTCTGATACTGATTCTATTGATGATCTTGGACCTATCCTTTTGTGGAGTGTAAATTTGTCTAAGGCTGCTGCTTCGGATGATAGTGAAAGTGGCCATGAAGTTCTTGTCGATTCTGTTGATGATGGCAGTGATCCTGAGGATTTCCCTTTCTGGACTATCACAATGTCCAAGTCATCTCTGCTTCTAGGAGGAATACTTTGGTCACCTATTCCTGCAAAATTTGTCAAAGAGGGCCTTCTGCAAAGTCAGCAGGTGTTGACTTTAAGACTTGACAACGGTGATCAAATTCTTTGCAAAATATTAAAAGATTCTAGGAGGCGGAATGAACGATATCTCGGTAGTGGTTGGTACAAGTTTTGTCGCGACCAAAAATTCAAGGAGGGAGATATGTTGTTGTTTTATTCAAAGGGAGATCCATACCATTTGTGTGTTAAGGTAAAACGCTCATAA 465 0.4043 MTIEESDTDSIDDLGPILLWSVNLSKAAASDDSESGHEVLVDSVDDGSDPEDFPFWTITMSKSSLLLGGILWSPIPAKFVKEGLLQSQQVLTLRLDNGDQILCKILKDSRRRNERYLGSGWYKFCRDQKFKEGDMLLFYSKGDPYHLCVKVKRS. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11033 154 Gene3D - 45 154 IPR015300 -
Seca4g11033 154 ProSiteProfiles B3 DNA-binding domain profile. 75 154 IPR003340 GO:0003677
Seca4g11033 154 SUPERFAMILY DNA-binding pseudobarrel domain 51 150 IPR015300 -
Seca4g11033 154 CDD B3_DNA 59 153 IPR003340 GO:0003677
Seca4g11033 154 Pfam B3 DNA binding domain 74 153 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11033 Seca-Chr4 248277641 248279677 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g11033 B3 6.5e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11033 - K00451 tpra:123891884 51.2174