Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11027 ATGAAGCTTTCAACATCAGGGTTGGGTCAAGAGGGACATGAAGGAGGGGAGAAGAAGTGTCTAAATTCTGAGCTATGGCATGCTTGCACGGGCCCCCTGGTGTCCCTACCAACTGCAGGGACTCGTATAGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTGTTGCTGCTACAACTAACAGAGAAGTTGATGGGCACATACCTAATTACCCCAGCTTGCCACCCCTGTTGATTTGCCAACTTCACAATGTCACAATGCATGCAGATGTTGAAACAGATGAAGTATATGCTCAAATGACACTACAGCCATTGACTCCGCAAGAACAGAAGGATACATTTCTTCCTATGGAATTGGGCATCCCAAGTAAGCATCCCTCAAATTACTTTTGCAAGACTTTAACAGCCAGTGACACCAGCACACATGGAGGATTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTCCCTCCACTGGATTTCTCTCAACAACCACCAGCACAAGAACTAATTGCTAGGGATCTCCATGACGTTGAATGGAAGTTTAGACATATTTTTCGGGGTCGGATTCTAACTCTCTTATCAGATATTTGTAAATAA 597 0.4523 MKLSTSGLGQEGHEGGEKKCLNSELWHACTGPLVSLPTAGTRIVYFPQGHSEQVVAATTNREVDGHIPNYPSLPPLLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKHPSNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGRILTLLSDICK. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11027 198 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 188 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca4g11027 198 CDD B3_DNA 128 188 IPR003340 GO:0003677
Seca4g11027 198 Gene3D - 127 194 IPR015300 -
Seca4g11027 198 SUPERFAMILY DNA-binding pseudobarrel domain 113 188 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11027 Seca-Chr4 248238100 248239744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11027 1 188 B3 DNA Binding Superfamily AT1G30330 80.952 9.94e-107 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11027 - - vun:114193813 379.407