Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11021 ATGATCTCTCTCTCTCACAAGACTTTGAATCCAGTGCCATCACCAACACCGCCCTCCTCCTCTAACGGGGAGTTCCGCATCCTTCCCTGCAAAACCAAGGAGAAGAAGGGCGTAACCACACCCTCCAACACCAAGGGACGAAAGGGCAGGCCCCGTGGTTCTAAGAACAAACCCAAGCCACCCATCCTAATCAAGGAAGATAGCAACCAACTTGTTAAACCAATCATCATTGAAATCTCTGCTGGAAATGACATTGTTGAGGCCATCATCAAGTTCGCTTCCCGTCATTGTGTCGGCATCTCAGTGCTAAGTTGTTCTGGTTCTGTCTCTAGTGTTACCCTTTGCCACCCTCTTTCTGGTATTGCTCCTCCTATCTCTTTTAATGGGAGCATCAACATTTTATCTCTCCTAGGCTTCTACATTTTATCTCTTCTAGGTACTTACATAAGTGGTGTTTTTACTCCATTCACCCGTACCCCCGCTTGTTCCTCCTTTTTCATTAACTTCTCCGGGCTACAGAGCAAAGTATTTCGAGGGATTGTTGGAGGAAAGGTTGTGGCTGCAGGTAATGTGGTTGTTGTGGGTTCAATGTTCAAGAAAATTGAGCACAACAAGGTGCACATAATCAATGGAATACTAGTTGAAGAGGGTGACATCACATATGTGCCTGGCATTAATGTCGATGCAAGCAACCCCAGTGGCATCACCAACACCACTGCCATTTTTTATCACCAACACCAGATATTATGCAGTAGTTTGAAATCATATTTTTAA 774 0.4496 MISLSHKTLNPVPSPTPPSSSNGEFRILPCKTKEKKGVTTPSNTKGRKGRPRGSKNKPKPPILIKEDSNQLVKPIIIEISAGNDIVEAIIKFASRHCVGISVLSCSGSVSSVTLCHPLSGIAPPISFNGSINILSLLGFYILSLLGTYISGVFTPFTRTPACSSFFINFSGLQSKVFRGIVGGKVVAAGNVVVVGSMFKKIEHNKVHIINGILVEEGDITYVPGINVDASNPSGITNTTAIFYHQHQILCSSLKSYF. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11021 257 SUPERFAMILY AF0104/ALDC/Ptd012-like 72 197 - -
Seca4g11021 257 CDD DUF296 73 149 IPR005175 -
Seca4g11021 257 MobiDBLite consensus disorder prediction 1 63 - -
Seca4g11021 257 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 207 IPR014476 GO:0003680
Seca4g11021 257 Pfam Plants and Prokaryotes Conserved (PCC) domain 73 196 IPR005175 -
Seca4g11021 257 ProSiteProfiles PPC domain profile profile. 68 220 IPR005175 -
Seca4g11021 257 Gene3D - 67 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11021 Seca-Chr4 248160610 248163135 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11021 48 206 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 36.025 2.36e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11021 - - cam:101509190 130.954