Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11020 ATGTCTGAAAATGAGTGTGCACCCTTTTTGCCCCTTGCCTCAGAGAATGACTCTATGGAGCAACACTCAGAGGGTTTCACCACTCTCTCTAAGAACTCCTCTGTCTTAGGCGATTCAAGTAAAGGAAACATGATCTCTCTCTCTAACAAGACTTTGAATCCAGTGCCATCACCAACACCGCCCTCCTCCTCTAACGGGGAGTTCCGCATCCTTCCCTGCAAAACCAAGGAGAAGAAGGACGTAACCACACCCTCCAACACCAAGGGACGAAAAGGCAGGCCCCATGGCTCTAAGATCAAACCCAAGTCACCCATCCTGATCAAGGAAGATAGCAACCGACTTGTTCAACAAATAATCATTGAAATCTCTGCTGGAAATGACATTGTTGAGGCAATCATCAAGTTTGCTTCCTGTCATTGTGTCGGCATCTCAGTGCTAAGTTGTTCCAGTTTTCTCTTTAGTGTTACCCTTCGTTACTCTCTTTCTGATATTGCTCCTCCTGTCTCTTTTAATGGGAGCTTCAACATTTTATCTCTCCTAGGTACTTACATAAGTGGTGTTTTTACTCCACTCACCCGTACCCTCGCTTGTTCCTCCTTTTTCATTAACTTCTCCGGGCCACATAGCAAAATATTTCGTGGGATTGTTGGAGGAAAGGTTGTGGCTGCAGGTAATGTGGTTGTTGTGGGTTCAATGTTCAAGAAGCTTGAGCACCACAAAGTGCGCATCATCAATGGAATACTAGTTGAAGAGGGTGACATCACATATGTGCTTGCCATTAATGTAGATGCAAGGAACCCCAGTGGCATCACCAACACCACTGCCATTGCTGATCACCAACACCAGATATAA 852 0.4542 MSENECAPFLPLASENDSMEQHSEGFTTLSKNSSVLGDSSKGNMISLSNKTLNPVPSPTPPSSSNGEFRILPCKTKEKKDVTTPSNTKGRKGRPHGSKIKPKSPILIKEDSNRLVQQIIIEISAGNDIVEAIIKFASCHCVGISVLSCSSFLFSVTLRYSLSDIAPPVSFNGSFNILSLLGTYISGVFTPLTRTLACSSFFINFSGPHSKIFRGIVGGKVVAAGNVVVVGSMFKKLEHHKVRIINGILVEEGDITYVLAINVDARNPSGITNTTAIADHQHQI. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11020 283 MobiDBLite consensus disorder prediction 71 86 - -
Seca4g11020 283 Pfam Plants and Prokaryotes Conserved (PCC) domain 118 231 IPR005175 -
Seca4g11020 283 SUPERFAMILY AF0104/ALDC/Ptd012-like 116 232 - -
Seca4g11020 283 CDD DUF296 118 218 IPR005175 -
Seca4g11020 283 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 67 241 IPR014476 GO:0003680
Seca4g11020 283 MobiDBLite consensus disorder prediction 1 102 - -
Seca4g11020 283 ProSiteProfiles PPC domain profile profile. 111 253 IPR005175 -
Seca4g11020 283 MobiDBLite consensus disorder prediction 16 53 - -
Seca4g11020 283 Gene3D - 116 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11020 Seca-Chr4 248158870 248159721 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11020 91 241 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 35.256 5.17e-25 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11020 - - cam:101509190 127.487