Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11019 ATGCGTGGTAGAGGTGGAGAGAAGATCCCACCGAGTAGAGGGAGGTCCATCCCTCCAGGCGAGCTACGACAACAAGCAGCTCGCTTGATGCGGGAGAGGGTCAACCTCTCTAACTCACACGCTGATCAGATGTCGGAGCATCCATCTACTTCAGCGTCGGCGGGCGCCATGCAGACTTCTTCTTCTTCCTCCCCTCCACCATATGCTTCGGCGCAGTTCGATGGTATGAGGTTCATCCCGAAACCGGGATTAGTTCATATGCCTGCAGTCCAGGAGGACATTGTGCCCGAGATAGACGCTGACGACGCTCAGGATGACTATGATAGGGATGCTGACCAAGAGTCTGATGAGGAGCCAGCTCGGTTCCAGGGTGCCAGCTCAAGCAAACCTCATGAGGCAGACGCTCGAGGTCGGGTGCCTAACGCCCTACCTATCGTAGTCGTTAGTCATGTGATCCGTTCGCAGTTCTGGGGTCCTCATTACCTTTGGGAGGTCACCCCAAAGGACGTTAGGGACAGGTGGTGGGATGAGTTCACTAGCCGAGTTACTTGGGACCCTTCTGATGAGGCCCAAATCAAGAAGGTGTACGAGCAGAGGGTTGCTCGTCGCCTTCGAGATATTATGAACAAGGCTCGGAAGAGGCCCACGTGGTGTGGTTCAATAGCTTGGGTGGGAGGTCGAGCTGGACGAGTTCTTTGCTACCACCCACTCCAAAAAGGATGGTGGCTGGGTAGATACCGGGCCCGGTCCACCCATACAAATTACAAGGGGCGCCTGAGGGAGGTGGAGTCACAGATGGGGGACACCTCCATGACTGATGCCTCCACCAAGCTGGAGATCTGGAGGGATGTTGCGGGTGGCAAGACCCGAGGCCGTTGTTATGGCACCGGGGACTGGCCTCGAACATTCGTCCAGTGGGAGTTTCGTATCCTTCCCTACAAAACCAAGGAGAAGAAGTGGGTAATCACACCCTCCAACACCAAGGGACGAAAGGGCAGGCCCCGTGGCTCTAAGAACAAACCCAAGTCACTCATCCTAATCAAAGAAGATAACAATCAACTTATTAAACCAATCATCATTGAAATCTCTGTTGGAAATGACATTGTTGAGGCCATCATCAAGTTCGCTTCCCGTCATTGTGTCGGTATCTCAGTGCTAAGTTGTCTTGGTTCTGTCTCTAATGTTACCCTTTGCCACCCTCTTTCTGATATTGCTCCTCCTGTCTCTAGTTCAAATTAG 1239 0.5319 MRGRGGEKIPPSRGRSIPPGELRQQAARLMRERVNLSNSHADQMSEHPSTSASAGAMQTSSSSSPPPYASAQFDGMRFIPKPGLVHMPAVQEDIVPEIDADDAQDDYDRDADQESDEEPARFQGASSSKPHEADARGRVPNALPIVVVSHVIRSQFWGPHYLWEVTPKDVRDRWWDEFTSRVTWDPSDEAQIKKVYEQRVARRLRDIMNKARKRPTWCGSIAWVGGRAGRVLCYHPLQKGWWLGRYRARSTHTNYKGRLREVESQMGDTSMTDASTKLEIWRDVAGGKTRGRCYGTGDWPRTFVQWEFRILPYKTKEKKWVITPSNTKGRKGRPRGSKNKPKSLILIKEDNNQLIKPIIIEISVGNDIVEAIIKFASRHCVGISVLSCLGSVSNVTLCHPLSDIAPPVSSSN. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11019 412 MobiDBLite consensus disorder prediction 1 74 - -
Seca4g11019 412 Pfam Plants and Prokaryotes Conserved (PCC) domain 356 396 IPR005175 -
Seca4g11019 412 MobiDBLite consensus disorder prediction 104 137 - -
Seca4g11019 412 MobiDBLite consensus disorder prediction 36 69 - -
Seca4g11019 412 SUPERFAMILY AF0104/ALDC/Ptd012-like 355 400 - -
Seca4g11019 412 Gene3D - 351 409 - -
Seca4g11019 412 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 318 402 IPR014476 GO:0003680
Seca4g11019 412 CDD DUF296 356 409 IPR005175 -
Seca4g11019 412 ProSiteProfiles PPC domain profile profile. 351 412 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11019 Seca-Chr4 248154196 248156744 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11019 331 400 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 50.000 1.49e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11019 - - psat:127103594 139.813