Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11017 ATGAAGGCCATGCCCTTACCTTTTGAGGAATTTCAAGGGAAGGGAGTGTTGGATTTCTCCTCAGCCTCAGATTCATTTTCACTGCTTTTGCATCAACCACAAAAGTGGACCAGAGACAAAGAGGATTGCTATGTGGGCACTGAGCCCACCTCTGTTCTTGACTCCAGAAGAAGCCCAAGCCCTCCTACTTCCTCCTCCACAATGTCCTCCTCTCTTGGTAGCAACAGCACCAGCAAGGGTGGCAGTGGTTCAGCCAACAACACCACTGGTACAGCCCCAACACTCTCAGAGAACCCTCCTCATGAAGCCTTGGAAACCAGCCCAGAAAAATGTGGTATGAGAATGGAGGACTGGGATGGTCAAGATCAATCCCTTCTCAGATTAATCATGGGTGATGTTGAAGACCCATCTGCTGGATTGAGCAAGCTCTTGCAGAGCACCACTGGCTGTGGGTCTCAAAATGTTGATTTCAATGGAGATTTTGGTGTTGTGGATCAAGGATTGAACATGGAAACCAATATTGACCCTTCTGTGCCAGGGAATTACCCTGCTTTCCCTTTTATTGCTGAGAATATAGATGGCCACAATGTAAAATCTGGTTCTGTCACGGTTTCTGAATCCATCTTCTCTGCTCCAGGTAACAATCCTCTTCCTGGTGTATATAACTCTCAGCAGCAGCAAGAGTTTGGAGTAGTGGATGAGAAGCCTCAAGTTATCAACCCCCAGTTTCTGTTAAACCAGAATCAAGTTCATTTCTCAGAGAACCCCTCTTTCTTTGTGCCATTGCCATACCCTCAAATGCAAGAGCAGCAAGTTTTCTCTCAGCATCAAGCAAAACGCCCCCTTTTTGACACATCTGGGCTCAATTATCAAGTTCCAAGGTCACCCCTTTTGGATTCTGGGCAAGAGGTGTTTGCTAGGAGGCAGCAAACACAGCTTCCATTGTTTCCTCATCATCTACAACAACAGCAATCATTGGTTGTACCATCTGCAAAACAGCAGAAGGTGAATTCTTCCGGAGATGATGCAAGCCACCAGCTTCAGCAGAGTATATTTGATCAGCTGTACAAGATTGCTGAGATGATAGAAGCTGGTAATCAGGTTCATGCGCAAGGGATATTGGCGCGGCTCAATCAGCAGCTCTCCCCAATTGGTAAGCCTTTTCAGAGGGCTGCTTTCTACATGAAGGAGGCCTTGCAATTAATGCTTCATTCAAACATTCACAATTTTTTGGCTTTCTCACCTATAAGTTTCATTTTCAAAATTGGAGCTTATAAATCATTTTCTGAGATATCACCAGTTCTACAGTTTGCTAATTTTACTTCCAATCAAGCCCTCATTGAAGCTTTGGAAAGGTTTGATCGAATTCATATTGTTGATTTTGATATTGGTTTTGGAGTGCAATGGTCTTCTTTTATGCAAGAGCTTGCCTTAAGAAGTAATGGTACACCTTCACTTAAAGTTACTGCTGTTGTTTCACCCTCAACTTGCAATGAGATTGAGCTCAATTTTACCAGAGAAAATTTGATACAATATGCAAAAGACATCAACATGTCATTTGAGCTCAATGTTTTGAACATTGAATCATTGAATTCTCCTTCTTGTCCACTGACTGGTCATTTCTTTGATAATGAGGCAATTGCTGTGAATATGCCAGTTTCATGTTTCACAAATTATCCATCATTGTTTCCTTTGGTCCTTCACTTTGTAAAGCAACTTAGGCCAAAAATTGTGGTCACTTTGGATAGAAATTGTGATCGAATTGATGTGCCACTTTCTACCAATGTAGTCCATGTTCTTCAAAGTTATTCAGCCTTGCTTGAATCACTAGATGCTGTGAATGTGAACCTGGATGTCCTACAGAAGATTGAGAGGCATTTCATCCAACCAGCCATAAAGAAAATTATAATGGGTCACCACCATTCACAAGACAAATTACCTCCATGGAGGACCCTTTTTCTTCAATCAGGATTCTCTCCCTTCACATTCAGTAACTTCACAGAAGCTCAAGCTGAGTGTTTAGTGCAAAGGGCACCTGTGCGAGGATTTCAAGTGGAAAGAAAGCCTTCCTCTCTTGTTCTATGCTGGCAGCGGAAAGAACTTATCTCAGTTTCAACTTGGAGATGCTGA 2130 0.4272 MKAMPLPFEEFQGKGVLDFSSASDSFSLLLHQPQKWTRDKEDCYVGTEPTSVLDSRRSPSPPTSSSTMSSSLGSNSTSKGGSGSANNTTGTAPTLSENPPHEALETSPEKCGMRMEDWDGQDQSLLRLIMGDVEDPSAGLSKLLQSTTGCGSQNVDFNGDFGVVDQGLNMETNIDPSVPGNYPAFPFIAENIDGHNVKSGSVTVSESIFSAPGNNPLPGVYNSQQQQEFGVVDEKPQVINPQFLLNQNQVHFSENPSFFVPLPYPQMQEQQVFSQHQAKRPLFDTSGLNYQVPRSPLLDSGQEVFARRQQTQLPLFPHHLQQQQSLVVPSAKQQKVNSSGDDASHQLQQSIFDQLYKIAEMIEAGNQVHAQGILARLNQQLSPIGKPFQRAAFYMKEALQLMLHSNIHNFLAFSPISFIFKIGAYKSFSEISPVLQFANFTSNQALIEALERFDRIHIVDFDIGFGVQWSSFMQELALRSNGTPSLKVTAVVSPSTCNEIELNFTRENLIQYAKDINMSFELNVLNIESLNSPSCPLTGHFFDNEAIAVNMPVSCFTNYPSLFPLVLHFVKQLRPKIVVTLDRNCDRIDVPLSTNVVHVLQSYSALLESLDAVNVNLDVLQKIERHFIQPAIKKIIMGHHHSQDKLPPWRTLFLQSGFSPFTFSNFTEAQAECLVQRAPVRGFQVERKPSSLVLCWQRKELISVSTWRC. 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11017 709 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 317 704 IPR005202 -
Seca4g11017 709 Pfam GRAS domain family 353 708 IPR005202 -
Seca4g11017 709 MobiDBLite consensus disorder prediction 51 96 - -
Seca4g11017 709 MobiDBLite consensus disorder prediction 37 110 - -
Seca4g11017 709 ProSiteProfiles GRAS family profile. 342 708 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11017 Seca-Chr4 248124919 248127048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11017 351 709 GRAS Transcription Factor Family AT4G00150 56.354 1.05e-130 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g11017 GRAS 1.1e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11017 - - gmx:100801785 1072.38