Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g11001 ATGTCCAGAAAGAGTATGGAGAGTATGATTTATGTCCAGAGCAGGCTTATTGTTGAACATGAAGTGGCAGTGTGTTTGGCTAAGGTTGAACATGATTTTGAGGCGCTGCAGCAATCTACGGAAGCTTATTATGACATGCTTGTGAAGTACCGTGAGAAATTAACGAGGCCTATACAAAAGGCGATGGATTTCATGCGGAGGACAGAAACTCAACTCAACATGCTTTGCAATGGACCCTTTCGGATCTTCTCTGCCAATGATAACTCATCTTCCTCAACTCATGGATCAAGATGGAAGTCTATGTCAAGTTATGCTGCCAAGCACGTTTCACAGGGAATTGAAATTCAGCTTGGTCTTGCGGTGGAAAGTCAAAAAGCAACTCTGTCTGTGAAAAGGAGGCTGACATGTGAACAGTTGATTTACTTTAGTCAGGGGAGAACTTGGGAAGCATATTTAGTACTACAATTTCAGACTAGCTTGGAAAGTGCAAATGGACTTGGCCAAGCTAAAGTAGATCCAGGAGATATACTATTTGTTCTTATTGCAGAGCAAAGAGAAAACTTTTAG 567 0.4162 MSRKSMESMIYVQSRLIVEHEVAVCLAKVEHDFEALQQSTEAYYDMLVKYREKLTRPIQKAMDFMRRTETQLNMLCNGPFRIFSANDNSSSSTHGSRWKSMSSYAAKHVSQGIEIQLGLAVESQKATLSVKRRLTCEQLIYFSQGRTWEAYLVLQFQTSLESANGLGQAKVDPGDILFVLIAEQRENF. 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g11001 188 SMART KNOX2_2 26 77 IPR005541 GO:0003677|GO:0005634
Seca4g11001 188 Pfam KNOX2 domain 41 76 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g11001 Seca-Chr4 247865506 247868943 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g11001 36 92 Homeobox Transcription Factor Family AT4G08150 59.649 2.49e-16 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g11001 - - gmx:100807602 90.1225