Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10996 ATGGTTCAACGATATCAGAAGGGTTTTGGGTTCATTACCCCTGATGATGGTAGCGAGGAACTCTTTGTTCACCAATCTCAGATTAAAACCCAAGGGTTTCGCAGCCTTGCTGAAGGAGAGTCCGTTGAGTTTCTCATCGACTCTGACCCTGACGGCCGCTCCAAAGTCGTCGATGACACCGGTCCTGATGGTGCTTCAGTTGTGGAGAGTCTGGGCATTTCATTAGAGATTGCCCAACAAGTGCTCGTTGAAATTACAGTATAA 264 0.4773 MVQRYQKGFGFITPDDGSEELFVHQSQIKTQGFRSLAEGESVEFLIDSDPDGRSKVVDDTGPDGASVVESLGISLEIAQQVLVEITV. 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10996 87 ProSitePatterns Cold-shock (CSD) domain signature. 9 28 IPR019844 -
Seca4g10996 87 Gene3D - 2 71 IPR012340 -
Seca4g10996 87 SUPERFAMILY Nucleic acid-binding proteins 2 52 IPR012340 -
Seca4g10996 87 CDD CSP_CDS 6 54 IPR002059 GO:0003676
Seca4g10996 87 PANTHER COLD SHOCK DOMAIN PROTEIN 2 6 69 - -
Seca4g10996 87 SMART csp_8 2 62 IPR011129 GO:0003676
Seca4g10996 87 Pfam 'Cold-shock' DNA-binding domain 6 53 IPR002059 GO:0003676
Seca4g10996 87 ProSiteProfiles Cold-shock (CSD) domain profile. 1 70 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10996 Seca-Chr4 247820391 247820654 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Seca4g10996 CSD 2e-18 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10996 - - gmx:100799708 110.153