Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g10982 | ATGGAGAAGCATAAGTGTAAGCTTTGTTCAAGGAACTTCTCTAATGGAAGAGCGTTAGGGGGTCACATGAGGTCTCACATGATGAACCTACCGGTTCCTCCAAAACCGAACGAGTCACCACCAACGGTTCAACTCAGTTTCGAAGCCGAGTCAGCTTCATCTCCTTCATCTTCTTCTTTTGAAGACAACAAATCTCTTTCCCTTTCCTATGGTCTCAGGGAGAATCCAAAGAAGAGTTTTCGATTTGCCGATCCTGAATTCTCGTTCGCCGGCGCGGCGGACGCCGGGTCAGTGATCCTCCAAGACAGAGAGAGCGAGACCGAGTCATCGAAGAATCCGACTCGGAGACGATCCAAACGGACTCGGACGAACCCGTGCGGCGAGAATAACAAGAACGAGTCAGCGAGTTCTGCATCGGACACAACCACGGAGGAAGACCTCGCGTTCTGTCTCATGTTGTTGTCTCGTGACAAGTGGAAGAGACAACGTGAGTTCATGGAGGAAGAAGAAGAAGAAGAGGATGAGGAGGAACAAGATGACGAGGAAGAAGAAGATGATAGCGACGATGAATCCGAGGAGCTGAAATCGTTGAAGACGAGGGCACGAGGGAGGTACAAATGTGACACATGTAACAAGGTTTTTCGGTCATACCAGGCATTGGGTGGACATAGAGCGAGTCACAAGAAGATCAAGGTAGTGGAAGAATCTGAATCTGAGCATAAGAATAATAATGGTGGAGCTTCTTCTGCTACTCCTGTGGTGATAGTTGCTGAGAAGAAAATTCATGAGTGTCCTGTTTGCTTCAGGGTATTTGCTTCAGGTCAAGCTCTTGGTGGACACAAGAGAACCCATGTTATAGGGTCAGCAACAGTAACAGCACCAGCAATAATCAATGAGGTTCGAAGTTCACCAAAGGTTGGTGATAGTTTGATAGATCTCAATTTACCTGCTCCTATGGATGATGATGATGTCGAGGACTCTGCTGTTTCGGATGCAGAATTTGTCAAACCAATTAGGCACTGA | 1023 | 0.4731 | MEKHKCKLCSRNFSNGRALGGHMRSHMMNLPVPPKPNESPPTVQLSFEAESASSPSSSSFEDNKSLSLSYGLRENPKKSFRFADPEFSFAGAADAGSVILQDRESETESSKNPTRRRSKRTRTNPCGENNKNESASSASDTTTEEDLAFCLMLLSRDKWKRQREFMEEEEEEEDEEEQDDEEEEDDSDDESEELKSLKTRARGRYKCDTCNKVFRSYQALGGHRASHKKIKVVEESESEHKNNNGGASSATPVVIVAEKKIHECPVCFRVFASGQALGGHKRTHVIGSATVTAPAIINEVRSSPKVGDSLIDLNLPAPMDDDDVEDSAVSDAEFVKPIRH. | 341 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g10982 | 340 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 205 | 232 | IPR013087 | - | |
Seca4g10982 | 340 | MobiDBLite | consensus disorder prediction | 17 | 65 | - | - | |
Seca4g10982 | 340 | MobiDBLite | consensus disorder prediction | 167 | 191 | - | - | |
Seca4g10982 | 340 | Pfam | C2H2-type zinc finger | 204 | 229 | - | - | |
Seca4g10982 | 340 | Pfam | C2H2-type zinc finger | 262 | 284 | - | - | |
Seca4g10982 | 340 | Pfam | C2H2-type zinc finger | 4 | 27 | - | - | |
Seca4g10982 | 340 | Gene3D | Classic Zinc Finger | 202 | 284 | - | - | |
Seca4g10982 | 340 | MobiDBLite | consensus disorder prediction | 163 | 197 | - | - | |
Seca4g10982 | 340 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 6 | 26 | IPR013087 | - | |
Seca4g10982 | 340 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 207 | 227 | IPR013087 | - | |
Seca4g10982 | 340 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 264 | 284 | IPR013087 | - | |
Seca4g10982 | 340 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 4 | 31 | IPR013087 | - | |
Seca4g10982 | 340 | Coils | Coil | 156 | 186 | - | - | |
Seca4g10982 | 340 | SMART | c2h2final6 | 4 | 26 | IPR013087 | - | |
Seca4g10982 | 340 | SMART | c2h2final6 | 262 | 284 | IPR013087 | - | |
Seca4g10982 | 340 | SMART | c2h2final6 | 205 | 227 | IPR013087 | - | |
Seca4g10982 | 340 | MobiDBLite | consensus disorder prediction | 98 | 143 | - | - | |
Seca4g10982 | 340 | SUPERFAMILY | beta-beta-alpha zinc fingers | 3 | 31 | IPR036236 | - | |
Seca4g10982 | 340 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 262 | 284 | IPR013087 | - | |
Seca4g10982 | 340 | SUPERFAMILY | beta-beta-alpha zinc fingers | 204 | 284 | IPR036236 | - | |
Seca4g10982 | 340 | PANTHER | ZINC FINGER PROTEIN ZAT1-RELATED | 1 | 336 | IPR044303 | GO:0006355 | |
Seca4g10982 | 340 | MobiDBLite | consensus disorder prediction | 41 | 65 | - | - | |
Seca4g10982 | 340 | MobiDBLite | consensus disorder prediction | 127 | 143 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g10982 | Seca-Chr4 | 247670092 | 247671114 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g10982 | 1 | 324 | C2H2 Transcription Factor Family | AT3G60580 | 43.064 | 2.90e-71 | 221 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Seca4g10982 | zf-C2H2_6 | 2.6e-13 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g10982 | - | - | aprc:113850450 | 377.481 |