Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10982 ATGGAGAAGCATAAGTGTAAGCTTTGTTCAAGGAACTTCTCTAATGGAAGAGCGTTAGGGGGTCACATGAGGTCTCACATGATGAACCTACCGGTTCCTCCAAAACCGAACGAGTCACCACCAACGGTTCAACTCAGTTTCGAAGCCGAGTCAGCTTCATCTCCTTCATCTTCTTCTTTTGAAGACAACAAATCTCTTTCCCTTTCCTATGGTCTCAGGGAGAATCCAAAGAAGAGTTTTCGATTTGCCGATCCTGAATTCTCGTTCGCCGGCGCGGCGGACGCCGGGTCAGTGATCCTCCAAGACAGAGAGAGCGAGACCGAGTCATCGAAGAATCCGACTCGGAGACGATCCAAACGGACTCGGACGAACCCGTGCGGCGAGAATAACAAGAACGAGTCAGCGAGTTCTGCATCGGACACAACCACGGAGGAAGACCTCGCGTTCTGTCTCATGTTGTTGTCTCGTGACAAGTGGAAGAGACAACGTGAGTTCATGGAGGAAGAAGAAGAAGAAGAGGATGAGGAGGAACAAGATGACGAGGAAGAAGAAGATGATAGCGACGATGAATCCGAGGAGCTGAAATCGTTGAAGACGAGGGCACGAGGGAGGTACAAATGTGACACATGTAACAAGGTTTTTCGGTCATACCAGGCATTGGGTGGACATAGAGCGAGTCACAAGAAGATCAAGGTAGTGGAAGAATCTGAATCTGAGCATAAGAATAATAATGGTGGAGCTTCTTCTGCTACTCCTGTGGTGATAGTTGCTGAGAAGAAAATTCATGAGTGTCCTGTTTGCTTCAGGGTATTTGCTTCAGGTCAAGCTCTTGGTGGACACAAGAGAACCCATGTTATAGGGTCAGCAACAGTAACAGCACCAGCAATAATCAATGAGGTTCGAAGTTCACCAAAGGTTGGTGATAGTTTGATAGATCTCAATTTACCTGCTCCTATGGATGATGATGATGTCGAGGACTCTGCTGTTTCGGATGCAGAATTTGTCAAACCAATTAGGCACTGA 1023 0.4731 MEKHKCKLCSRNFSNGRALGGHMRSHMMNLPVPPKPNESPPTVQLSFEAESASSPSSSSFEDNKSLSLSYGLRENPKKSFRFADPEFSFAGAADAGSVILQDRESETESSKNPTRRRSKRTRTNPCGENNKNESASSASDTTTEEDLAFCLMLLSRDKWKRQREFMEEEEEEEDEEEQDDEEEEDDSDDESEELKSLKTRARGRYKCDTCNKVFRSYQALGGHRASHKKIKVVEESESEHKNNNGGASSATPVVIVAEKKIHECPVCFRVFASGQALGGHKRTHVIGSATVTAPAIINEVRSSPKVGDSLIDLNLPAPMDDDDVEDSAVSDAEFVKPIRH. 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10982 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 205 232 IPR013087 -
Seca4g10982 340 MobiDBLite consensus disorder prediction 17 65 - -
Seca4g10982 340 MobiDBLite consensus disorder prediction 167 191 - -
Seca4g10982 340 Pfam C2H2-type zinc finger 204 229 - -
Seca4g10982 340 Pfam C2H2-type zinc finger 262 284 - -
Seca4g10982 340 Pfam C2H2-type zinc finger 4 27 - -
Seca4g10982 340 Gene3D Classic Zinc Finger 202 284 - -
Seca4g10982 340 MobiDBLite consensus disorder prediction 163 197 - -
Seca4g10982 340 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Seca4g10982 340 ProSitePatterns Zinc finger C2H2 type domain signature. 207 227 IPR013087 -
Seca4g10982 340 ProSitePatterns Zinc finger C2H2 type domain signature. 264 284 IPR013087 -
Seca4g10982 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Seca4g10982 340 Coils Coil 156 186 - -
Seca4g10982 340 SMART c2h2final6 4 26 IPR013087 -
Seca4g10982 340 SMART c2h2final6 262 284 IPR013087 -
Seca4g10982 340 SMART c2h2final6 205 227 IPR013087 -
Seca4g10982 340 MobiDBLite consensus disorder prediction 98 143 - -
Seca4g10982 340 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Seca4g10982 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 262 284 IPR013087 -
Seca4g10982 340 SUPERFAMILY beta-beta-alpha zinc fingers 204 284 IPR036236 -
Seca4g10982 340 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 336 IPR044303 GO:0006355
Seca4g10982 340 MobiDBLite consensus disorder prediction 41 65 - -
Seca4g10982 340 MobiDBLite consensus disorder prediction 127 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10982 Seca-Chr4 247670092 247671114 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10982 1 324 C2H2 Transcription Factor Family AT3G60580 43.064 2.90e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g10982 zf-C2H2_6 2.6e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10982 - - aprc:113850450 377.481