Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10980 ATGGCTTTGATTGTGGATCAACAATCAAACTTCAAACATTTTTGTAAAATTTGCAAAAAAGGTTTTGGGTGTGGAAGAGCTCTAGGAGGACACATGAGGGCACATGGCATAGGTGATGAATCAGGGCACATGGATGATGATGACCCTGCAAGTGATTGGGAAGAAAGGCTAGGTGGTAATGTTCCACCAAGCAACAAACGCATGTATGCTCTAAGAACAAACCCAAATAGGCTAAAGAGCTGTAGGGTATGTGAGAATTGTGGTAAAGAGTTCTTATCTTGGAAATCCTTCCTTGAGCATGGAAAATGCACTTCTGAAGATGCAGAGTCCCTTTCCCTTGTCTCTTCTCCTGGCTCCGACGCCGTCGCCGATGACGTCGGCCGGCGAGGTTGCGGTGGTTGGTCCAAAAGGAAAAGATCTTTGAGAACAAAAGTTGGAAGCTTTAACTATAATTGTCCTTCAAGCGAGGAAGAAGACTTAGCTAATTGTTTGATGATGTTGTCCAATGCCATTGTTGATCCTCTTGTGGCAGAGCCTGAAGAATCATGTGCCTCAGCTAGCAAAGATGAAGAAAGAAGAAACCCCATGAACTTCATTGCACCATTATCATACAGAGCCCCCATTGATCATAATAACAACAACAACAATAAGGCTAAAGGGGTAGCAAGCAAAGGCTTATTTGAATGTAAAGCATGCAAGAAAGTCTTCAACTCACACCAAGCATTAGGTGGTCACAGAGCAAGTCACAAGAAAGTTAAGGGCTGTTTTGCTGCAAGATTAGACAACATTGATGATAGTCTTGTAGAGGATGATGTCATAACACATGAAGAATTCTTCCCTACAAAATCAAATTCTACATTCCAATTTGATCATGGCTCTTCCAACCCCACATTGGGTTCTTCCTCAAAGAGAAAATCCAAGGTTCATGAATGCTCAATTTGTCATAGGAGTTTCTCTTCAGGACAAGCATTGGGAGGACACAAGAGGTGCCATTGGATTACATCAAATGCACCAGACACATCAACATTGGCAAGGTTTCAACAATTTCATCATCAAGAACACATGGAACAAATACCAAAGTTTGATGCATCCTCTGAGACAATTGATCTCAAACTAGACCTTAACCTCCCTGCTCCTACCAACAATGAACTTGCAAGAAGGAATAATAATGTGTCCACGGAAATTTACTTGCAGCCATGGGTTGCAACAAAGGAAATCAAAGAGGATAATAACAATAGTCAATGTCAGAGTCATCAGCATGTTAACCAAGTTGACAATGAAAATGATGAGGAAAAAAACAATAACACTTTGATGCAAAATGTGGATAATGAAGCTGATAGTAAGATCAAGTTGGCAAAATTAAGTGAGCTAAAGGACATGAACATGGGTGGAACTTCTTCACCATGGTTGCAGGTGGGAATCGGTTCAACAACCGATGTGGGGACTGATACATAA 1455 0.4124 MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDESGHMDDDDPASDWEERLGGNVPPSNKRMYALRTNPNRLKSCRVCENCGKEFLSWKSFLEHGKCTSEDAESLSLVSSPGSDAVADDVGRRGCGGWSKRKRSLRTKVGSFNYNCPSSEEEDLANCLMMLSNAIVDPLVAEPEESCASASKDEERRNPMNFIAPLSYRAPIDHNNNNNNKAKGVASKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDNIDDSLVEDDVITHEEFFPTKSNSTFQFDHGSSNPTLGSSSKRKSKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFHHQEHMEQIPKFDASSETIDLKLDLNLPAPTNNELARRNNNVSTEIYLQPWVATKEIKEDNNNSQCQSHQHVNQVDNENDEEKNNNTLMQNVDNEADSKIKLAKLSELKDMNMGGTSSPWLQVGIGSTTDVGTDT. 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10980 484 PANTHER OS02G0659100 PROTEIN 2 481 - -
Seca4g10980 484 Gene3D Classic Zinc Finger 224 331 - -
Seca4g10980 484 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Seca4g10980 484 ProSitePatterns Zinc finger C2H2 type domain signature. 229 249 IPR013087 -
Seca4g10980 484 MobiDBLite consensus disorder prediction 38 59 - -
Seca4g10980 484 MobiDBLite consensus disorder prediction 284 302 - -
Seca4g10980 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 227 254 IPR013087 -
Seca4g10980 484 MobiDBLite consensus disorder prediction 38 54 - -
Seca4g10980 484 Pfam C2H2-type zinc finger 227 251 - -
Seca4g10980 484 Pfam C2H2-type zinc finger 13 35 - -
Seca4g10980 484 Pfam C2H2-type zinc finger 308 333 - -
Seca4g10980 484 Gene3D Classic Zinc Finger 11 103 - -
Seca4g10980 484 SMART c2h2final6 309 331 IPR013087 -
Seca4g10980 484 SMART c2h2final6 13 35 IPR013087 -
Seca4g10980 484 SMART c2h2final6 227 249 IPR013087 -
Seca4g10980 484 ProSitePatterns Zinc finger C2H2 type domain signature. 311 331 IPR013087 -
Seca4g10980 484 SUPERFAMILY beta-beta-alpha zinc fingers 13 101 IPR036236 -
Seca4g10980 484 SUPERFAMILY beta-beta-alpha zinc fingers 226 331 IPR036236 -
Seca4g10980 484 MobiDBLite consensus disorder prediction 284 303 - -
Seca4g10980 484 ProSiteProfiles Zinc finger C2H2 type domain profile. 309 331 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10980 Seca-Chr4 247649993 247651447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10980 124 376 C2H2 Transcription Factor Family AT1G02040 35.039 1.85e-31 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g10980 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10980 - - gmx:100793846 806.979