Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca4g10979 | ATGGATGTTGTTCTTCATTACATGTTTTCTCTTATATTACTTCATTCTCTACTCTTAAACCCTTGTTATTGTCTTCTCCATCGAAAATTGTTTAATGCTTCCAAAATTCAAAACGATGATCAATGGGAAACAGCAGCAGCTACATGGTATGGAGCTCCAGACGGTGCTGGAACGGATGGGGGTGCTTGTGGATACGTTGACAGTGTGGAGAAACCTCCACTCTCTAAAATGGTATCAGCTGGTGGTCATTCTCTTTTCCTTGATGGCAAAGGATGTGGCGCTTGTTATGAGGTGAAATGCACAGAAAATGGTGCATGTTCAGGAAAACCGGTGACAGTGATGATATCTGATGAATGCCCTGGCTGTGCCTTAAAATCAGTCCAATTCGATATGAGTGGCACTGCCTTTGGTTCCATGGCAAGTCCAGGCAAGGCAGATGAACTTCGCAAAGCTGGACAGCTTAATAATATTCAGTATAGAAGGGTTGCATGTTCGTTTGGGAATTCTATAGCGTTCAGAATTGACGGTGGGTCGAACCCATACTATTTTGCTACGGAAATAGAATACGAAAATGGGGACGGGGATCTTGTGGACATTGAGTTGAAGCAAGGTCATGAATCAGACACGTGGCTTCCAATGAAGCGTTCGTGGGGTGCAAGATGGGCTTTGCAATCATCAAGTGGTTCAGAGTTGCAACCTCCATTCTCAATAAAGTTGATAGAGGCTTGCAAGGGCACCAACAAGAACAAGACCCTTGTGGCTCATAATGTCATTCCTCTCAACTGGCAACCTGACCAAGTTTATCGATCTGTCGTCAATTTCTAG | 825 | 0.44 | MDVVLHYMFSLILLHSLLLNPCYCLLHRKLFNASKIQNDDQWETAAATWYGAPDGAGTDGGACGYVDSVEKPPLSKMVSAGGHSLFLDGKGCGACYEVKCTENGACSGKPVTVMISDECPGCALKSVQFDMSGTAFGSMASPGKADELRKAGQLNNIQYRRVACSFGNSIAFRIDGGSNPYYFATEIEYENGDGDLVDIELKQGHESDTWLPMKRSWGARWALQSSSGSELQPPFSIKLIEACKGTNKNKTLVAHNVIPLNWQPDQVYRSVVNF. | 275 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca4g10979 | 274 | PANTHER | EXPANSIN-B3 | 18 | 274 | - | - | |
Seca4g10979 | 274 | ProSiteProfiles | Expansin, family-45 endoglucanase-like domain profile. | 60 | 169 | IPR007112 | - | |
Seca4g10979 | 274 | Pfam | Expansin C-terminal domain | 170 | 259 | IPR007117 | - | |
Seca4g10979 | 274 | ProSiteProfiles | Expansin, Cellulose-binding-like domain profile. | 181 | 270 | IPR007117 | - | |
Seca4g10979 | 274 | SUPERFAMILY | Barwin-like endoglucanases | 39 | 166 | IPR036908 | - | |
Seca4g10979 | 274 | Gene3D | - | 166 | 274 | IPR036749 | - | |
Seca4g10979 | 274 | PRINTS | Expansin/Lol pI family signature | 59 | 77 | IPR007118 | GO:0005576 | |
Seca4g10979 | 274 | PRINTS | Expansin/Lol pI family signature | 152 | 168 | IPR007118 | GO:0005576 | |
Seca4g10979 | 274 | PRINTS | Expansin/Lol pI family signature | 41 | 56 | IPR007118 | GO:0005576 | |
Seca4g10979 | 274 | PRINTS | Expansin/Lol pI family signature | 82 | 100 | IPR007118 | GO:0005576 | |
Seca4g10979 | 274 | PRINTS | Expansin/Lol pI family signature | 210 | 224 | IPR007118 | GO:0005576 | |
Seca4g10979 | 274 | CDD | DPBB_EXPB_N | 42 | 164 | - | - | |
Seca4g10979 | 274 | Pfam | Lytic transglycolase | 79 | 150 | IPR009009 | - | |
Seca4g10979 | 274 | SUPERFAMILY | PHL pollen allergen | 169 | 270 | IPR036749 | - | |
Seca4g10979 | 274 | PRINTS | Major pollen allergen Lol pI signature | 140 | 155 | IPR005795 | GO:0005576|GO:0019953 | |
Seca4g10979 | 274 | PRINTS | Major pollen allergen Lol pI signature | 188 | 203 | IPR005795 | GO:0005576|GO:0019953 | |
Seca4g10979 | 274 | PRINTS | Major pollen allergen Lol pI signature | 100 | 110 | IPR005795 | GO:0005576|GO:0019953 | |
Seca4g10979 | 274 | PRINTS | Major pollen allergen Lol pI signature | 80 | 91 | IPR005795 | GO:0005576|GO:0019953 | |
Seca4g10979 | 274 | PRINTS | Major pollen allergen Lol pI signature | 172 | 187 | IPR005795 | GO:0005576|GO:0019953 | |
Seca4g10979 | 274 | PRINTS | Major pollen allergen Lol pI signature | 246 | 263 | IPR005795 | GO:0005576|GO:0019953 | |
Seca4g10979 | 274 | Gene3D | - | 29 | 165 | IPR036908 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca4g10979 | Seca-Chr4 | 247626335 | 247627812 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca4g10979 | 20 | 274 | Expansin Gene Family | AT1G65680 | 51.953 | 1.44e-90 | 268 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca4g10979 | - | - | gmx:100786475 | 367.466 |