Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10979 ATGGATGTTGTTCTTCATTACATGTTTTCTCTTATATTACTTCATTCTCTACTCTTAAACCCTTGTTATTGTCTTCTCCATCGAAAATTGTTTAATGCTTCCAAAATTCAAAACGATGATCAATGGGAAACAGCAGCAGCTACATGGTATGGAGCTCCAGACGGTGCTGGAACGGATGGGGGTGCTTGTGGATACGTTGACAGTGTGGAGAAACCTCCACTCTCTAAAATGGTATCAGCTGGTGGTCATTCTCTTTTCCTTGATGGCAAAGGATGTGGCGCTTGTTATGAGGTGAAATGCACAGAAAATGGTGCATGTTCAGGAAAACCGGTGACAGTGATGATATCTGATGAATGCCCTGGCTGTGCCTTAAAATCAGTCCAATTCGATATGAGTGGCACTGCCTTTGGTTCCATGGCAAGTCCAGGCAAGGCAGATGAACTTCGCAAAGCTGGACAGCTTAATAATATTCAGTATAGAAGGGTTGCATGTTCGTTTGGGAATTCTATAGCGTTCAGAATTGACGGTGGGTCGAACCCATACTATTTTGCTACGGAAATAGAATACGAAAATGGGGACGGGGATCTTGTGGACATTGAGTTGAAGCAAGGTCATGAATCAGACACGTGGCTTCCAATGAAGCGTTCGTGGGGTGCAAGATGGGCTTTGCAATCATCAAGTGGTTCAGAGTTGCAACCTCCATTCTCAATAAAGTTGATAGAGGCTTGCAAGGGCACCAACAAGAACAAGACCCTTGTGGCTCATAATGTCATTCCTCTCAACTGGCAACCTGACCAAGTTTATCGATCTGTCGTCAATTTCTAG 825 0.44 MDVVLHYMFSLILLHSLLLNPCYCLLHRKLFNASKIQNDDQWETAAATWYGAPDGAGTDGGACGYVDSVEKPPLSKMVSAGGHSLFLDGKGCGACYEVKCTENGACSGKPVTVMISDECPGCALKSVQFDMSGTAFGSMASPGKADELRKAGQLNNIQYRRVACSFGNSIAFRIDGGSNPYYFATEIEYENGDGDLVDIELKQGHESDTWLPMKRSWGARWALQSSSGSELQPPFSIKLIEACKGTNKNKTLVAHNVIPLNWQPDQVYRSVVNF. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10979 274 PANTHER EXPANSIN-B3 18 274 - -
Seca4g10979 274 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 169 IPR007112 -
Seca4g10979 274 Pfam Expansin C-terminal domain 170 259 IPR007117 -
Seca4g10979 274 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 181 270 IPR007117 -
Seca4g10979 274 SUPERFAMILY Barwin-like endoglucanases 39 166 IPR036908 -
Seca4g10979 274 Gene3D - 166 274 IPR036749 -
Seca4g10979 274 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Seca4g10979 274 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576
Seca4g10979 274 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Seca4g10979 274 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Seca4g10979 274 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Seca4g10979 274 CDD DPBB_EXPB_N 42 164 - -
Seca4g10979 274 Pfam Lytic transglycolase 79 150 IPR009009 -
Seca4g10979 274 SUPERFAMILY PHL pollen allergen 169 270 IPR036749 -
Seca4g10979 274 PRINTS Major pollen allergen Lol pI signature 140 155 IPR005795 GO:0005576|GO:0019953
Seca4g10979 274 PRINTS Major pollen allergen Lol pI signature 188 203 IPR005795 GO:0005576|GO:0019953
Seca4g10979 274 PRINTS Major pollen allergen Lol pI signature 100 110 IPR005795 GO:0005576|GO:0019953
Seca4g10979 274 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576|GO:0019953
Seca4g10979 274 PRINTS Major pollen allergen Lol pI signature 172 187 IPR005795 GO:0005576|GO:0019953
Seca4g10979 274 PRINTS Major pollen allergen Lol pI signature 246 263 IPR005795 GO:0005576|GO:0019953
Seca4g10979 274 Gene3D - 29 165 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10979 Seca-Chr4 247626335 247627812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10979 20 274 Expansin Gene Family AT1G65680 51.953 1.44e-90 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10979 - - gmx:100786475 367.466