Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10975 ATGAGCCAGTGTGTTCCTAACTGGGATGTGGACGACAATACTCCCACATCCACAAGACTTCCTCTTCTTCCCAATCCCAATCTCATTCCCTTCGATATCCCGATGTTGGAGCATGGGATTGAAGAACTAGCATGGGAAAACGGACAACTTTCTATGCATGAGCATGGCTTAAAACCGCCGCCGAAGCCTCTCAACACTGCAAACCCTACTACATGGGAAAAGCATGACACATTCGACTTCATAATCAACCAAGGCATCGGCGGTTATGGAAATGGTATGGTCCCTTGGCATGACCCTCGCCGTGCTCCTGCGCCGGCCAAAACGGTGGCTACTGATGCTTTAGTGCCGTGCTCCAATTACCGTACGGAAGAGCAGCGGAGCATGCATCAGGCAGTTACGGAGTCCGGAAGGGTTGGCACGTGCGTGGCGGGTTCCTCTACACGTGTGGCGTCTTGTGGTGGGGCCTCAATTCAGGAGGACGATGGCGGCGTCATCGCCGGGAAACGTGCCGGTGTGGTGGCGCGTGCGCCTACGGAGAACGAGTTGAGTGGCTGCTGGGATCGGAGTGTGAGTGGCAGTGCCACTTGCCACAGGGATTTGAGTGTAGGTATCGCTCCTGCTTCCATGGGTTCGCCGGAAAACACCACTAGGACCACCACCATTGACGACCATGATTCCATCTGTCACCGTAGATCACAGGCAATGCTCTTCTCAAGTGAGACACTGGATGAGGATTACAAGACAAAAAGAATGGAGAGATCTTCATTGTCCACTAAAAGGAACAGAGCTGCAGCTGTGCACAACCAATCTGAAAGGAAAAGGAGAGATAAGATCAACCAAAGAATGAAGGCATTGCAAAAGTTGGTCCCAAATTCCAGTAAGACTGATAAAGCATCAATGCTGGATGAGGTAATAGAATATCTGAAGCAATTGCAAACGCAAGTACAAATGATGAATTGGATGAAAATGTCGTCCATGATGCTGCCAATAACCATGCAACAACAACTTCAAATGTCTATGATGGCTCAAATGGGGATGGGGATGGGGATGGGTATGGGGATGGGCATGGACATGAACTCCATGAATATTCCAAACATCCCTCCTGTCTTCCCCTTCATGCCTATGGCCTCATCATGGGATGCCTGCGGTGGGGATCGACTGCAAGGAGCACCAGCAACGGTGGATGGCTGCCCTGTATTTGCAGCTGCAGCATCCTCCAGGTTCTACTTCCAAGAGCTGAACGAGCTTCTACGTGTTCCACCAGCAGCTTTCTGA 1275 0.5098 MSQCVPNWDVDDNTPTSTRLPLLPNPNLIPFDIPMLEHGIEELAWENGQLSMHEHGLKPPPKPLNTANPTTWEKHDTFDFIINQGIGGYGNGMVPWHDPRRAPAPAKTVATDALVPCSNYRTEEQRSMHQAVTESGRVGTCVAGSSTRVASCGGASIQEDDGGVIAGKRAGVVARAPTENELSGCWDRSVSGSATCHRDLSVGIAPASMGSPENTTRTTTIDDHDSICHRRSQAMLFSSETLDEDYKTKRMERSSLSTKRNRAAAVHNQSERKRRDKINQRMKALQKLVPNSSKTDKASMLDEVIEYLKQLQTQVQMMNWMKMSSMMLPITMQQQLQMSMMAQMGMGMGMGMGMGMDMNSMNIPNIPPVFPFMPMASSWDACGGDRLQGAPATVDGCPVFAAAASSRFYFQELNELLRVPPAAF. 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10975 424 Coils Coil 268 288 - -
Seca4g10975 424 Gene3D - 257 322 IPR036638 GO:0046983
Seca4g10975 424 Pfam Helix-loop-helix DNA-binding domain 266 312 IPR011598 GO:0046983
Seca4g10975 424 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 262 311 IPR011598 GO:0046983
Seca4g10975 424 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 41 374 IPR031066 -
Seca4g10975 424 FunFam transcription factor UNE10 isoform X1 257 322 - -
Seca4g10975 424 SMART finulus 268 317 IPR011598 GO:0046983
Seca4g10975 424 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 260 322 IPR036638 GO:0046983
Seca4g10975 424 CDD bHLH_AtPIF_like 262 323 IPR047265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10975 Seca-Chr4 247548096 247552510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10975 1 405 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 42.824 1.10e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g10975 HLH 2.4e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10975 - - ahf:112697399 315.464