Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10969 ATGACGCAAGTGCAATTCATCCTATCCTTGTTTCTTGTTCTTTTTGGTCCACTCCTAGTGATCTCAGTAGACCAAGCTTTCAACGATGATGTCCTGGGGTTGATTGTGTTCAAGGCTGGTCTTGAAGACCCAAAAGGTAAACTCTCTACGTGGAGTGAAGATGATTCTAGTCCCTGCAATTGGAATGGTGTCAAATGTGACCCTGCAACCAATAGGGTATCTGCTCTTGTCCTTGATGGATTCTCTCTTTCTGGCCACATTGGTAGAGGGCTTCTGAGATTGCAATTCCTTCAAATTTTGTCCCTTTCTAGGAATAACTTCACAGGGACCTTAAACCCTGATCTTCTTAGCTTTCGGAATTTACAAGTTGTTGATTTGAGTGAGAACAACCTCTCTGGGTCAATCCCATATGGACTTTTCCAGCAATGTTGGTCTCTAAGAGTGGTATCATTTGCAAAAAACAACCTCACAGGTAAGATTCCTGATTCTTTGAGCTCCTGCTCCTCATTAGCAACTCTGAACTTTTCCTCTAATCTGCTAAATGGGGAACTACCATCTGGGATGTGGTTTTTGAGGGAACTACAGTCACTTGATCTGTCAAATAACTTGCTGGAAGGAGAGATTCCTGATGGAATTCAGAATCTTTATGATTTGAGGGAGTTGAGGCTAGGGAAGAATCACTTCACTGGTAGGCTTCCTGTGGATATTGGAGGCTGCTTGCTTTTGAAGTTGATTGATATCAGTGGCAATTTTCTATCTGGGAAACTTCCTGAGTCAATACAAAGACTCACCTCATGCACATTCCTCAGTTTGCAAGGAAATTCATTCACAGGACATGTTCCAAATTGGATTGGAGAATTGAAAAATCTTGAGATATTAGATCTTTCTGCAAATACATTTTCTGGTTGGATTCCAAAATCAATAGGAAATCTTGACTCGTTGAGTAGATTAAATCTGTCCAGGAATCAGCTCACAGGAAACCTGCCAGAGTCAATGGTAAACTGCATTAAGCTTTTGACTCTTGACATCAGTCACAATCACTTGGCAGGACTTATTTCTTCATGGATATTTAGGATGGGCTTACAAAGCATCTCACTTTCTGGGAACAGCTTCAGTAAGAGCAATTATCCTTCACTTACTTCTATACCTGTATCTTATCATGGCCTTCAGGTTTTGGACTTGTCATCAAATGCATTTTCTGGCGAACTTCCATCTGGCATTGGAGGTCTTAGTAGTTTGCAAGTCTTAAATTTGTCCACCAACAATATCTCTGGTTCTATTCCAGTCAGTATAAGAGAACTTAAATCATTATACATTCTTGACTTCAGTGACAACAGGCTTAATGGAAGCATCCCTTCTGAAATAGAAGGGGCAATTTCACTCAGTGAACTGAGGCTACAAAAGAACTTCATAGGTGGGAGAATTCCATCCCAAATTGAGAAGTGTTCATCTCTCACATATTTGAATCTTGCTCACAACAAGCTTATTGGTTCAATCCCTGCACCCATTGCAAACCTAACCAATCTTCATCATGTAGATTTGTCATGGAATCAACTCTCTGGAAGCCTACCCAAGGAGCTGGCAAATCTTACCCAGCTTTTCTCATTTAATGTTTCCCATAACCATCTTCAAGGTGAGCTACCAGTGGGTGGCTTCTTCAATACCATCTCTCCCTTATCAGTCTCTGGTAATCCATTGTTATGTGGTTCTGTTGTTAACCACTCTTGCCCATCTGTCCATCCAAAACCTATTGTCCTAAACCCCAATTCTTCTTACTCAAACTCCAGAGCTTCCTTACAAAATCATCATCATAAGATCATGCTCAGCATCTCTGTCCTTATTGCTATTGGTGCAGCTATTTTTATTGCCATTGGTGTGGTGGCTGTTACTGTCCTAAATATTCATGTGCAATCTTCAAAGTCACACTCTGCTGCTCCATTTGCATTCTCTGGTGGTGAGGACTATAATTGTTCCCCCACAAATGATCCAAACTATGGCAAGCTTGTGATGTTTTCTGGTGATGCTGAATTTGCTGATGGAGCTCACAATCTTCTTAACAAAGACAGTGAAATTGGTCGTGGTGGATTTGGGGTTGTTTATTGCACTGTCCTTCGAAATGGGCGTTCTGTTGCAATCAAGAAACTTACAGTGTCCAGTTTGACTAAGTCCCAAGAAGACTTTGAAATGGAGGTTCAAAAGCTTGGGAAGATCAGGCACCAGAATCTTGTGACACTTGAAGGTTATTACTGGACTTCATCCTTACAGCTCCTTATTTATGAGTACCTAGCTAGAGGGAGTTTGCACAAGCTTCTACATGATGATAATAGCAAAATTGTTTTTTCTTGGCGACAAAGGTTCAAGATTATTCTAGGAATGGCAAAAGGGTTGGCCTATTTGCACCAAATGAACATAATCCATTATAATCTAAAATCAACAAATGTTTTGATTGATTGTTCTGGTGAGCCAAAAATAGGAGATTTTGGCTTGGTGAGGCTATTGCCAATGCTAGACCATTGTGTTTTGAGCAGCAAAGTTCAAAGTGCACTTGGATACATGGCTCCTGAGTTTGCTTGCCGCACAGTTAAGATAACTGAGAAATGTGATATATATGGTTTTGGAATCCTGGTTCTGGAGGTGGTGACAGGAAAAAGACCTGTGGAATATATGGAAGATGATGTGGTTGTTCTATGTGAAATGGTGAGGGGTGCACTGGAGGATGGCAAGGTGGAGCAATGTGTTGATGGGAAGCTTGTAGGTAATTTTGCTGCAGAGGAAGCAATTCCTGTGATGAAATTGGGGTTAGTTTGTGCATCACAAGTGCCTTCAAACCGTCCAGATATGGCTGAGGTAGTCAACATATTAGAGTTGATCCAATGCCCTTCAGAAGGACAAGAGGAATTACAATGA 2907 0.4107 MTQVQFILSLFLVLFGPLLVISVDQAFNDDVLGLIVFKAGLEDPKGKLSTWSEDDSSPCNWNGVKCDPATNRVSALVLDGFSLSGHIGRGLLRLQFLQILSLSRNNFTGTLNPDLLSFRNLQVVDLSENNLSGSIPYGLFQQCWSLRVVSFAKNNLTGKIPDSLSSCSSLATLNFSSNLLNGELPSGMWFLRELQSLDLSNNLLEGEIPDGIQNLYDLRELRLGKNHFTGRLPVDIGGCLLLKLIDISGNFLSGKLPESIQRLTSCTFLSLQGNSFTGHVPNWIGELKNLEILDLSANTFSGWIPKSIGNLDSLSRLNLSRNQLTGNLPESMVNCIKLLTLDISHNHLAGLISSWIFRMGLQSISLSGNSFSKSNYPSLTSIPVSYHGLQVLDLSSNAFSGELPSGIGGLSSLQVLNLSTNNISGSIPVSIRELKSLYILDFSDNRLNGSIPSEIEGAISLSELRLQKNFIGGRIPSQIEKCSSLTYLNLAHNKLIGSIPAPIANLTNLHHVDLSWNQLSGSLPKELANLTQLFSFNVSHNHLQGELPVGGFFNTISPLSVSGNPLLCGSVVNHSCPSVHPKPIVLNPNSSYSNSRASLQNHHHKIMLSISVLIAIGAAIFIAIGVVAVTVLNIHVQSSKSHSAAPFAFSGGEDYNCSPTNDPNYGKLVMFSGDAEFADGAHNLLNKDSEIGRGGFGVVYCTVLRNGRSVAIKKLTVSSLTKSQEDFEMEVQKLGKIRHQNLVTLEGYYWTSSLQLLIYEYLARGSLHKLLHDDNSKIVFSWRQRFKIILGMAKGLAYLHQMNIIHYNLKSTNVLIDCSGEPKIGDFGLVRLLPMLDHCVLSSKVQSALGYMAPEFACRTVKITEKCDIYGFGILVLEVVTGKRPVEYMEDDVVVLCEMVRGALEDGKVEQCVDGKLVGNFAAEEAIPVMKLGLVCASQVPSNRPDMAEVVNILELIQCPSEGQEELQ. 969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10969 968 Gene3D Ribonuclease Inhibitor 290 579 IPR032675 -
Seca4g10969 968 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Seca4g10969 968 ProSitePatterns Protein kinases ATP-binding region signature. 691 714 IPR017441 GO:0005524
Seca4g10969 968 Gene3D Phosphorylase Kinase; domain 1 668 761 - -
Seca4g10969 968 SUPERFAMILY L domain-like 53 306 - -
Seca4g10969 968 Gene3D Transferase(Phosphotransferase) domain 1 762 966 - -
Seca4g10969 968 Pfam Leucine Rich Repeat 194 215 IPR001611 GO:0005515
Seca4g10969 968 Pfam Leucine Rich Repeat 242 263 IPR001611 GO:0005515
Seca4g10969 968 SUPERFAMILY RNI-like 245 567 - -
Seca4g10969 968 SMART LRR_sd22_2 506 532 - -
Seca4g10969 968 SMART LRR_sd22_2 191 214 - -
Seca4g10969 968 SMART LRR_sd22_2 287 313 - -
Seca4g10969 968 SMART LRR_sd22_2 434 457 - -
Seca4g10969 968 PRINTS Leucine-rich repeat signature 338 351 - -
Seca4g10969 968 PRINTS Leucine-rich repeat signature 410 423 - -
Seca4g10969 968 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 307 580 - -
Seca4g10969 968 FunFam Putative LRR receptor-like serine/threonine-protein kinase IRK 28 306 - -
Seca4g10969 968 Pfam Leucine rich repeat 388 447 IPR001611 GO:0005515
Seca4g10969 968 Pfam Leucine rich repeat 460 519 IPR001611 GO:0005515
Seca4g10969 968 Pfam Protein kinase domain 686 893 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10969 968 SUPERFAMILY Protein kinase-like (PK-like) 686 958 IPR011009 -
Seca4g10969 968 SMART LRR_typ_2 530 554 IPR003591 -
Seca4g10969 968 SMART LRR_typ_2 311 335 IPR003591 -
Seca4g10969 968 SMART LRR_typ_2 118 142 IPR003591 -
Seca4g10969 968 SMART LRR_typ_2 215 239 IPR003591 -
Seca4g10969 968 SMART LRR_typ_2 506 529 IPR003591 -
Seca4g10969 968 SMART LRR_typ_2 434 458 IPR003591 -
Seca4g10969 968 SMART LRR_typ_2 410 433 IPR003591 -
Seca4g10969 968 SMART LRR_typ_2 287 310 IPR003591 -
Seca4g10969 968 SMART LRR_typ_2 191 214 IPR003591 -
Seca4g10969 968 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 679 761 - -
Seca4g10969 968 PANTHER LEUCINE RICH REPEAT KINASE 2 212 957 - -
Seca4g10969 968 CDD STKc_IRAK 691 957 - -
Seca4g10969 968 Gene3D Ribonuclease Inhibitor 187 283 IPR032675 -
Seca4g10969 968 Gene3D Ribonuclease Inhibitor 28 186 IPR032675 -
Seca4g10969 968 ProSiteProfiles Protein kinase domain profile. 685 957 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10969 968 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 762 963 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10969 Seca-Chr4 247517542 247520634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10969 20 967 Receptor kinase-like Gene Family AT3G56370 61.611 0.0 1124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Seca4g10969 Pkinase 3.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10969 - - gmx:100791204 1605.88