Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10966 ATGGTAGTTGTGAAGAGGCTAAAGAAAGCGATAGAGAAAACAGAATTTCAACGAGAAGTGAAGGTTGTGCACATGTTGAGTTCTGAGCACCCAAATGTTATTCCCCTTCGTGCATACTACTACCACGACCACGAGGGTGAAAAGCTTCTGATTTATGACTACATAATGGCTGGCAGTTTGTCCAGGTTTTTGCAAGGTAATTACTGTTATTTTACACATTTTTTTCTGATTTAA 234 0.3889 MVVVKRLKKAIEKTEFQREVKVVHMLSSEHPNVIPLRAYYYHDHEGEKLLIYDYIMAGSLSRFLQGNYCYFTHFFLI. 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10966 77 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 2 65 IPR046959 -
Seca4g10966 77 Pfam Protein tyrosine and serine/threonine kinase 2 67 IPR001245 GO:0004672|GO:0006468
Seca4g10966 77 ProSiteProfiles Protein kinase domain profile. 1 77 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10966 77 SUPERFAMILY Protein kinase-like (PK-like) 2 71 IPR011009 -
Seca4g10966 77 Gene3D Transferase(Phosphotransferase) domain 1 1 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10966 Seca-Chr4 247503214 247503447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10966 2 67 Receptor kinase-like Gene Family AT5G58300 49.254 5.90e-14 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca4g10966 PK_Tyr_Ser-Thr 1.1e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10966 - - ncol:116262341 70.8626