Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10965 ATGTCAGATTGCATATCAGATTTTGGGTTAAATCGTCTAGCCCATGTCTCTGCCAACCCCCCTGAAAGTGAAGGCTACTGCTACCGAGCACCAGAGGTTGTTGAAACCGGACAGCTGACCCAAAAGTGTGATGTATACAGCTTCGGTGTTATCCTTTGCGAGATGCTGAATGATGTTGAACCACCACGCCGGAATTTATGCGAGGTTCTGGAATTGGTCCAGCGTCATGGGAGATGGACTCCACCAGACTCTGCCTGTCACCGTTACATTAGAAGACATGAGTGGGATATGTGGACACTTGCAGTGAACTGTGTGGCACGGGAACCTGAACGGAGACCTTCAATGGCGGAAGTAGTTAAGAACATCCAATCAATTCTTGACGAAAATTCAGGTTTCCTTATTTATGATCACTTTTTTGGGAATGATAAGGAGTTGCATTTGTTAAGTAACTGGGATTCAAATCTGCAGTGTCCAATCCCTAACCCTATCAATATCATCACTCCAATTCCAATTAGGAAAATGTTAGATAGACACAACAATATATAA 546 0.4377 MSDCISDFGLNRLAHVSANPPESEGYCYRAPEVVETGQLTQKCDVYSFGVILCEMLNDVEPPRRNLCEVLELVQRHGRWTPPDSACHRYIRRHEWDMWTLAVNCVAREPERRPSMAEVVKNIQSILDENSGFLIYDHFFGNDKELHLLSNWDSNLQCPIPNPINIITPIPIRKMLDRHNNI. 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10965 181 ProSiteProfiles Protein kinase domain profile. 1 126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10965 181 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 2 128 IPR046959 -
Seca4g10965 181 SUPERFAMILY Protein kinase-like (PK-like) 4 129 IPR011009 -
Seca4g10965 181 Gene3D Transferase(Phosphotransferase) domain 1 2 139 - -
Seca4g10965 181 Pfam Protein tyrosine and serine/threonine kinase 5 121 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10965 Seca-Chr4 247502324 247503026 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10965 4 125 Receptor kinase-like Gene Family AT5G58300 41.667 2.66e-18 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca4g10965 PK_Tyr_Ser-Thr 1e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10965 - - sspl:121793379 90.1225