Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10959 ATGCATTTTGGTGCCTCTTTCTTTCTTCCTTTCTTATTCTGCATGCACACGCCTTCTTTCTCTCTCTGCTCCATACCCCTCTCTCTCTTTCTACTTCTATCTCCGGTCACCGTCGTTTCAAATCTCCGTCCGGTTCTGCTCCGCCGGTCATATTCAGACGACTTTCTAATCGAGACTCGTTTCCCTGCTCCGCCACGCGAATGCAAATCCCAAATCGCAACACGCGCGGCGCCTTCTCTTCCTAGAATCCGCCGGCGAACGGAACTGCTCCTCGCAAACTTCCGGCGACGTCGAGTGGAAGCGACGCGAGCTTCGTTCTTCGGTTTGATTTCGGTACAGACACTGGATTGCGCCTCCTGTTTTCGAACTTGTGGAGTGGAGATTGTGGAATTGAAGTTGAAAATGGAGTCAAGAAGTTGCATGAACGTGGCGTGTGCCACCTCAACGTCGATTCGGTGGCGCAAAGGTTGGGCCCTGCGATCCGGTGAATTCGCCGATCTGTGTGATAAGTGCGGCTCTGCTTATGAGCAATCAACGTATTGTGATATGTTCCACTCAAACGATTCTGGATGGAGAGAGTGCACTTCATGTGGCAAGCGTCTCCATTGTGGATGTGTTGCTTCTAGGTCTCTGCTTGAACTACTAGATACTGGTGGCGTCAGCTGTATAAACTGTGCAAGTAATTCAGGACTTCAACCTGCTGCAAGTAATGAAAAGCCTAATGGATCTGGGACATCAAAGATTAAAAATGTCAGTGCACAGCAGTGTGTGTCTCTGGCAAACCAATTAAATGTGAGGGGTATGCAAGCAGGGCAATATGTGGAGAATGATGGGCTGAGGTGCTGGCTCAAACCTCATCATGTTGATACAGAGGGGCATTCTACAGAAATGAAACCGGAAGTTTTGCCTTCTGTTGGAGAATTAGGAAGCACTTTGATATCACAATTTCATCGTGAGTCTAATGGATCATCTAAGACTGCCAAAGCAGAGAACTGTAAGGCAGACACAGACATGCAAGATATATATGAATCGCTGGCACAGACAAATTTGAGTATGACCCTTGCTTCCCCTTTAGGAAATTCAAATCCCTTTCATAGTGCTGTTGTTAATGAAAGGGAACAAAGTAAGACATCACCTCCACTTTTATTGGGGTCTAGATCTCGCCATCTTTTACCTAAACCCCCTAGGCCAACTCTTGCCCCAGGCTTAGAAGCAAATGCTGGCATGGTATCCCAGATTCGTATAGCAAGGCCTCCTGCTGAAGGACGTGGAAGGAATCAGTTGCTTCCACGTTATTGGCCTAGAATTACATATCAAGAGTTGCAACAAATATCAGGAGAGTATCCATCATTCTCAAACTCCACCATCGTGCCACTCTTTGAAAAGATGCTTAGTGCAAGTGATGCTGGTCGAATTGGTCGCTTGGTTCTACCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCTGAGGGCCTTCCTTTACGAATCCAAGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGTGTAACCCCCTGCATTCAGTCTATGCAATTGCAAGCTGGAGATACTGGTATATTCTACTGA 1638 0.4621 MHFGASFFLPFLFCMHTPSFSLCSIPLSLFLLLSPVTVVSNLRPVLLRRSYSDDFLIETRFPAPPRECKSQIATRAAPSLPRIRRRTELLLANFRRRRVEATRASFFGLISVQTLDCASCFRTCGVEIVELKLKMESRSCMNVACATSTSIRWRKGWALRSGEFADLCDKCGSAYEQSTYCDMFHSNDSGWRECTSCGKRLHCGCVASRSLLELLDTGGVSCINCASNSGLQPAASNEKPNGSGTSKIKNVSAQQCVSLANQLNVRGMQAGQYVENDGLRCWLKPHHVDTEGHSTEMKPEVLPSVGELGSTLISQFHRESNGSSKTAKAENCKADTDMQDIYESLAQTNLSMTLASPLGNSNPFHSAVVNEREQSKTSPPLLLGSRSRHLLPKPPRPTLAPGLEANAGMVSQIRIARPPAEGRGRNQLLPRYWPRITYQELQQISGEYPSFSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTGIFY. 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10959 545 Gene3D - 434 545 IPR015300 -
Seca4g10959 545 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 137 544 - -
Seca4g10959 545 MobiDBLite consensus disorder prediction 369 395 - -
Seca4g10959 545 Pfam B3 DNA binding domain 460 545 IPR003340 GO:0003677
Seca4g10959 545 ProSiteProfiles B3 DNA-binding domain profile. 460 545 IPR003340 GO:0003677
Seca4g10959 545 SMART B3_2 460 544 IPR003340 GO:0003677
Seca4g10959 545 CDD B3_DNA 458 545 IPR003340 GO:0003677
Seca4g10959 545 SUPERFAMILY DNA-binding pseudobarrel domain 457 544 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10959 Seca-Chr4 247434940 247438432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10959 135 544 B3 DNA Binding Superfamily AT4G32010 54.458 5.54e-135 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g10959 B3 2.8e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10959 K09287 - gmx:100778833 737.258