Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10958 ATGGACCCTGAGGGAAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTGCTGCAGTACAGGAAACACTTCCGTCTAATATGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATCTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCACAAAAGGGATGTTCAGAAACCCACCTAAATGCACTGTCCAAAAAATGGAACTCAGCTGGTGGTGACATGAGTTGGCATAATATTGACATGCCTGAAAGCAGGAAAAGAGATGGGTTGCCTTTGCCACCTGTTCTGGCTCCTGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTGAAACTTACTTGGGAAGAGGCTCAGGATTTGCTTCGTCCACCTCCAACAGTTAAGCCAAGCGTTGTCATGATTGAGGATCATGTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGAAAAAGGAGCATATTTGTGGTACGATCAACTGGGATAAATGAGCAGTGGACACAGTGTGATAGTTGCTCAAAATGGCGAAAGTTGCCAGTTGATGTACTTATTCCCCCTAAGTGGACATGTGTGGAGAATTTATGGGATCAGAGCAGGTGTTCATGTTCTGCTCCCAATGAATTGAACCCGAGGGAACTAGATAATCTACTGAGACTGAACAAGGAATTCAAGAAACAAAGACTAGCAGCATGCCAAAGACCAGCCCTGGAACAAGAAAGTTCTGGACTGGATGCTTTGGCAAATGCTGCAGTACTTGGAGATGATGCAAGTGACTCTGGCAGGACACCTGTCGTTACCACTACAAAACACCCCCGGCATAGACCTGGGTGCTCCTGCATTGTATGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACCTGCAATGTGTGCATGACAGTTAAACGTCGGTTTAAAACCCTGATGATGAGAAAGAAGAAGCGTCAATCTGAACGTGAAGCAGAGATTGCTCAGAGAAATCAGTTATCATGGAAGGCCAAGGATGAATCAGACGTAGACAGCAGCTCTCGACATTTAACTCTAGTTGATGGTTCTGACAATGAAGCAAGGGTGCCAAATGAGTTGGATTCAAGGAATCAAGACCATGTGGCTGAAGCTGCCAAGGGGCAATTAGACTTGAATTGCCAACCTGATCGAGAAGACATGCAAGCTGGGCCAAACACTCTGAGTATGATGAGTCTTCTTGAAGAAGCAAATCTCCCACTGGAGACATACCTAAAGCAAAACGGTCTTACCAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAGACAACCAATGAGAGCGAGGGAAGACATAATGAGAATTGCTATACTCCTTCTGCGGTTCAGGAGCAGGAAAGCAGTCCTGAAGAGAACAGTGGGCAAGACAGAGACCAAAACAATTCACTCTCATGA 1500 0.448 MDPEGKLIMGFRKATNSAAVQETLPSNMPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNALSKKWNSAGGDMSWHNIDMPESRKRDGLPLPPVLAPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPTVKPSVVMIEDHVFEEYEEPPVFGKRSIFVVRSTGINEQWTQCDSCSKWRKLPVDVLIPPKWTCVENLWDQSRCSCSAPNELNPRELDNLLRLNKEFKKQRLAACQRPALEQESSGLDALANAAVLGDDASDSGRTPVVTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQRNQLSWKAKDESDVDSSSRHLTLVDGSDNEARVPNELDSRNQDHVAEAAKGQLDLNCQPDREDMQAGPNTLSMMSLLEEANLPLETYLKQNGLTSLISEQQTNSASNVQAQTTNESEGRHNENCYTPSAVQEQESSPEENSGQDRDQNNSLS. 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10958 499 MobiDBLite consensus disorder prediction 446 499 - -
Seca4g10958 499 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 1 451 - -
Seca4g10958 499 MobiDBLite consensus disorder prediction 352 382 - -
Seca4g10958 499 Gene3D - 182 238 - -
Seca4g10958 499 ProSiteProfiles Zinc finger CW-type profile. 179 229 IPR011124 GO:0008270
Seca4g10958 499 Pfam CW-type Zinc Finger 184 226 IPR011124 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10958 Seca-Chr4 247430130 247434354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10958 2 468 B3 DNA Binding Superfamily AT4G32010 44.538 8.05e-125 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10958 K09287 - gmx:100778833 933.71