Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10957 ATGGGGTGTTTCACTATCTTCATGTCCAAGAAGAAAAAGCCTGATCAAATCACGCACTTAAGACGTGTCAGCCTTGATGAGCATGTGCCTACAGTACTTCCTGAACCTCAAACTCTTACTCAGTCATCGCGGTCTAGTAGAGGGAAATCCATTCACCCCATTAACAATGGTTACAACAACAGAACACGAGCATTATCTGCTCCATCATCTCTTGCTGCTGCAGAACAGGATGCTCCAGCCTCATTTGTGAATGAGAAACAAGAAAGGCCAAAGTGCCGAACAAGATCACTGAAGGAGCAGCAATTACCTGGACCACAACCTTTACCCCTTCCCACTCCTAAGGATGGTGGTGCATCAAAGGCTATTAACAGCCATAAGTCAGGGTTGGCTAGGGGTTCTAAAAATGCTTCTGGTTCAGCTCTTGATGCAGCAGAACAAGTTGATTTAGCCTCAATGAAGGAGTCTAAACAACAAGCTGGGGCAATGAAGGAGCAGCATTTACCTAATCCACAACCTTGCCCTCTTCCATATCCTCAGGGTGGTGGGGGTGCATTGAAGGCTACTGGCAACTTTAAGTTAGGGATGCCAACTTTTCCTCTATATGCTTCTGGATCTTTTCCCCTTCCATCCACTGGGCCACCTCGTTACTTTCTGTATGAGGAAATTGCTGCTGCTTGCCACAATTTCTCCTCAGATCAATGCATGGCAGAAGGTCTTTCTTCCACCATTTATAAAGCTTCCTTTGCTGATAATCATTCAACTTCAAAGGAGTTTGAAGCCACTATCACCCGCCTCCACCCATCAACTCAGGGTTTGAGGGAATTCATTAATGAGGTGAATATTCTTGCAACTTTGCAACATCCCAACCTCTGCAAATTGATAGGATTTCATGTGCGTGATGGCTCTGAGCCAAGGATGTTGGTTTATGAAAGGCTATGCCATGGAAGCTTGGACCGCTTGTTATTTGGAAGATCTGATTCTCCTTCAATTGATTGGAACACCAGGATGAAAATTGCCTTTTGTGCTGCAAAAGGTCTTAATTTCTTGCATGAACAAGGGCCTCTCCAGACAATGTATAATGAATTTTCAACAGCCAACATACAAATAGACAAAGATTTCAATGCAAAGCTTTCAGGATATGGTTGTGTTGGACATATTCCTGGGAAAGAGATTTCAAGCAGGCCACTCACTTTTGGAAACCTTTCATTGGAAACACTGGAAAGAGAAATGCTTAATGAAAAGAACAATGTATGGTGTTTTGGAATTGTTCTTCTGGAGCTACTTACTGGCAGAAAGAACATGGACACCCATCACCCCAAAGAGGAGAGGGACTTAATCAAGTGGACCAAGCCTTACCTTGCTGATGATTTCCGGCTGTCATTGATAATGGATCCTCAACTTAAGGGTCACTTTCCATCCAGAGCAGTGAGAGTAGTAGCTGACATTGTGCAGAGATGCCTCCAAAAGGAGCCATCAGACAGACCCAACATGAGAACCATTGTTGAGCATCTCAAAGTGATACAGGATATGAAGTACTGCTGTTGGTTCCCACTGCAAGAGCCAGCAGGCATGCCTAGGAAAGAAAAGCCAAAATCACCAAGTTTTGATGGCATCACTTCTCATGCACCTACATCAAGTTTCCCTCCATCATCATCATCAGTAGCAAGACCATCTTCTTCACCTCCAAGATGGGCTGGTGTGCCCACCCCACTTCCTTCTCCTTCTCCTTCTCCTTGTGCTTGTTCCTCCACTCCCTCAATTGGGGAGCCTAGTAAATAG 1779 0.4469 MGCFTIFMSKKKKPDQITHLRRVSLDEHVPTVLPEPQTLTQSSRSSRGKSIHPINNGYNNRTRALSAPSSLAAAEQDAPASFVNEKQERPKCRTRSLKEQQLPGPQPLPLPTPKDGGASKAINSHKSGLARGSKNASGSALDAAEQVDLASMKESKQQAGAMKEQHLPNPQPCPLPYPQGGGGALKATGNFKLGMPTFPLYASGSFPLPSTGPPRYFLYEEIAAACHNFSSDQCMAEGLSSTIYKASFADNHSTSKEFEATITRLHPSTQGLREFINEVNILATLQHPNLCKLIGFHVRDGSEPRMLVYERLCHGSLDRLLFGRSDSPSIDWNTRMKIAFCAAKGLNFLHEQGPLQTMYNEFSTANIQIDKDFNAKLSGYGCVGHIPGKEISSRPLTFGNLSLETLEREMLNEKNNVWCFGIVLLELLTGRKNMDTHHPKEERDLIKWTKPYLADDFRLSLIMDPQLKGHFPSRAVRVVADIVQRCLQKEPSDRPNMRTIVEHLKVIQDMKYCCWFPLQEPAGMPRKEKPKSPSFDGITSHAPTSSFPPSSSSVARPSSSPPRWAGVPTPLPSPSPSPCACSSTPSIGEPSK. 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10957 592 MobiDBLite consensus disorder prediction 28 142 - -
Seca4g10957 592 MobiDBLite consensus disorder prediction 524 592 - -
Seca4g10957 592 MobiDBLite consensus disorder prediction 537 559 - -
Seca4g10957 592 Gene3D Transferase(Phosphotransferase) domain 1 312 514 - -
Seca4g10957 592 SUPERFAMILY Protein kinase-like (PK-like) 206 517 IPR011009 -
Seca4g10957 592 MobiDBLite consensus disorder prediction 563 579 - -
Seca4g10957 592 PANTHER OS01G0588500 PROTEIN-RELATED 159 508 - -
Seca4g10957 592 MobiDBLite consensus disorder prediction 82 96 - -
Seca4g10957 592 Gene3D Phosphorylase Kinase; domain 1 210 310 - -
Seca4g10957 592 Pfam Protein tyrosine and serine/threonine kinase 233 504 IPR001245 GO:0004672|GO:0006468
Seca4g10957 592 ProSiteProfiles Protein kinase domain profile. 229 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10957 592 MobiDBLite consensus disorder prediction 34 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10957 Seca-Chr4 247425725 247428117 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10957 204 508 Receptor kinase-like Gene Family AT4G02010 36.129 8.18e-55 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-II Seca4g10957 PK_Tyr_Ser-Thr 5.2e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10957 - - aprc:113849641 697.197