Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10943 ATGGAATGTGAAGAGAACAGCTCTGTGGGATTGGAATCAAAATCAGTGAGGCACAACAATGGGTCAATACCAAATCAGCAGATAACAATTGATGAGAACCTTCTGGTTGACCCCAATCTGTTGTTTATTGGAGCGAAAATTGGCGAGGGAGCTCATGGGAGAGTTTATAGAGGAAGGTATAGAGATGGAATTGTTGCTATTAAAGTTCTACATGATGGGAGCACTTCAGAAGAAAGAGCTATCCTTGAAAGTCGTTTTGCTCGGGAAGTTAATATGATGTCTCGTGTCCAACATGAGAATCTTGTTAAGGTGTGTCATTGTTTTGTATATGCTTGCAATTGTCTTATCTGTATCTGTTTAGTCACTGTTTCACTGAAGCAGTTTATTGGAGCTTGTAAGGATCCTCTGAAGGTGATTGTTACAGAGCTGTTACCAGGGATGTCATTGAGAAAATATTTGATCACTTTACGCCCTAAAACATTGGACCTTTTAGTGGCTATAAACTTTGCCCTTGATATTGCTCGAGCCATGGATTGGCTACATGCCAATGGGATCATACATAGAGATCTGAAACCTGACAATCTGCTGCTGACAGCAAATCAGAAGTCAGTTAAACTTGCTGATTTTGGTATGGCAAGAGAAGAATCTCTGACTGAAATGATGACTGCGGAAACTGGAACTTACCGTTGGATGGCACCAGAGTTATACAGTACTGTAACATTGCGTCAAGGGGAGAAAAAGCATTACAACAACAAGGTTGATGTCTACAGCTTTGGAATTGTTTTGTGGGAGCTACTAACAAATCGCATGCCATTTGAAGGAATGTCCAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCTAACCTTCCAGGCGATATATCTCCTGATCTTGCCTTCATCATACAATCATGCTGGGTTGAAGATCCTAACCTGAGACCAAGCTTTAGTCAAATTATTCGCATGCTTAATGAATTTCTCTTAACACTCCAACAACCATCCCCTTCTTTGCCAGAACCTGAGGAGGAGGCTACTACAACAAGTAACAGTACCTCCATAACTGACTTTTCTACCCGTAACAGAAGGAAGTTTGCTTTTCTTCGCCATTTGTTTTCTTCAAAGAGAACCAAAAACTAA 1146 0.4092 MECEENSSVGLESKSVRHNNGSIPNQQITIDENLLVDPNLLFIGAKIGEGAHGRVYRGRYRDGIVAIKVLHDGSTSEERAILESRFAREVNMMSRVQHENLVKVCHCFVYACNCLICICLVTVSLKQFIGACKDPLKVIVTELLPGMSLRKYLITLRPKTLDLLVAINFALDIARAMDWLHANGIIHRDLKPDNLLLTANQKSVKLADFGMAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDVYSFGIVLWELLTNRMPFEGMSNLQAAYAAAFKQERPNLPGDISPDLAFIIQSCWVEDPNLRPSFSQIIRMLNEFLLTLQQPSPSLPEPEEEATTTSNSTSITDFSTRNRRKFAFLRHLFSSKRTKN. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10943 381 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 41 330 - -
Seca4g10943 381 Gene3D Transferase(Phosphotransferase) domain 1 148 368 - -
Seca4g10943 381 PIRSF TyrPK_CSF1-R 38 112 - -
Seca4g10943 381 PIRSF TyrPK_CSF1-R 148 377 - -
Seca4g10943 381 CDD STKc_MAP3K-like 47 326 - -
Seca4g10943 381 PRINTS Tyrosine kinase catalytic domain signature 179 197 IPR001245 GO:0004672|GO:0006468
Seca4g10943 381 PRINTS Tyrosine kinase catalytic domain signature 297 319 IPR001245 GO:0004672|GO:0006468
Seca4g10943 381 PRINTS Tyrosine kinase catalytic domain signature 141 154 IPR001245 GO:0004672|GO:0006468
Seca4g10943 381 PRINTS Tyrosine kinase catalytic domain signature 253 275 IPR001245 GO:0004672|GO:0006468
Seca4g10943 381 Gene3D Phosphorylase Kinase; domain 1 25 119 - -
Seca4g10943 381 SUPERFAMILY Protein kinase-like (PK-like) 25 356 IPR011009 -
Seca4g10943 381 Pfam Protein tyrosine and serine/threonine kinase 43 326 IPR001245 GO:0004672|GO:0006468
Seca4g10943 381 ProSitePatterns Protein kinases ATP-binding region signature. 47 68 IPR017441 GO:0005524
Seca4g10943 381 ProSiteProfiles Protein kinase domain profile. 41 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10943 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 185 197 IPR008271 GO:0004672|GO:0006468
Seca4g10943 381 MobiDBLite consensus disorder prediction 337 358 - -
Seca4g10943 381 SMART serkin_6 41 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10943 Seca-Chr4 247160781 247164576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10943 29 381 MAP Kinase Kinase Kinase AT5G01850 73.654 0.0 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca4g10943 Pkinase 1.3e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10943 - - gmx:100816708 549.28