Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10939 ATGTACAAGGGAAGATTAGGAGACAAAGCTCAGTTTGGATATGTTGAAACTGACCCATCTGGGCGATATGGACGTTTCAGGGATATTCTAGGCAAAGGAGCCGTGAAGGTAGTGTATAGAGCATTTGATGAGGTCCTAGGAATAGAAGTGGCTTGGAACCAAGTCAAGCTTGGTGATGTCTTTCATTCACCAGACCAACTTCAGCGCCTATATTCAGAGGTTCATCTCCTCAAGAACTTGGACCATGACTCTATCATCACCTTCCATGATTCTTGGATCGATGCCAGTTGTAGAACCTTCAACTTCATCACTGAATTATTCACCTCTGGCACCTTAAGAGAGTATAGAAAAATGTACCCTCGAGTAGATATCAGAGCAGTGAAGAACTGGGCTCGCCAGATACTAAATGGTTTGGAGTATTTGCACAGTCATGATCCTCCTGTGATACATAGAGACCTCAAGTGTGATAATATATTTGTTAATGGCCATCTGGGGCAGGTCAAGATTGGTGACTTAGGCCTTGCAGCCATTCTTCGTGGCTCCCAACATGCCCACAGTGTTATAGGTACACCAGAATTTATGGCACCAGAATTGTATGAAGAGGAATACAATGAGCTAGTAGACATATACTCCTTTGGGATGTGTATGATAGAGCTGTTTACTTCAGAGTTCCCATACAGCGAGTGCTCCAACCCTGCTCAAATATACAAGAAAGTTACTTCTGGGAAGCTGCCAGAAGCATTTTATAGAATCCATGATTTGGAAGCCCAAAGGTTTGTGGGAAAATGTTTGGCAAATGTCTCAGAGAGGTTATCAGCAAAGGAGCTCTTGTTAGACCCATTTTTAGCCACAGACCAACTTGGTTCACCCTTGCCAAGCCCAACATTACCTAGAAAACATACTCCTACACTCAATTTCACTGATGCAGTTGAGAAAGAGAAAACTTCAATAAGTGACCAAACAAAGAGCACATACATGACAATCACTGGATCAATAAATAATGAAGAGGATGACACAGTTTTCCTTAAAGTACAGATTTCTAACAAAACTGGGCTCACAAGAAATATATACTTCCCATTCAACACAATAAATGACACTGCTATTGAGGTGGCAATGGAGATGGTTAAAGAACTTGAAATCAGTGACTTGGAACCATTGGAGATTGCTGAAATGATAGAGGAGGAGATATCAGCTTTAGTTCCAACATGGAAGGATTGGGGCAATTCAAAGTATCAAAGACAACATAGTTTTAACTATGAAGAAGAGGATGATATCAGTAACCACCATCCTTTCTTCTCATCCTCTTCTCGTTCTTCCTCTCATGGTTCTCTCCCAATGTTTGGTTCTTCCTACAAGAACAACATCCATCTTTGTGGGAACCATTACCCTTTTTCTCAAGATTGGTCTCAAGATGATCTATTTATGAATGATGATGAAAGCTCTCAAAGCTCAATGAACTCCTTGAAGTGTTTCAATTTCCATTGCTGCGACTCAAGCAATGAAGATGAGCATCATCCAACACTAGTAGTAGGAGCAGAACCACTTAGCTTCACACCAAAGGCCAGCAAAATGAGCACAAGATTCTGTCCTCGAGAAGAGGCTGATTTCATCAAACAGTTTTACAACATGAGATTGAGAATGGATTCTCACTCTCACATGTGTCATGGATCAGGGCATGGATATAAGAGGTTGACAAGGATTCGTTCCTATGTTGATGTGAGGAGACAGCAACTGCAAAGGTCACTGATGGAGGAGATGCACAAGAAAAGGATGTTCAAGACGGTTGGTACCATTCAGAACATTGGGTTTCAGAATCCAGAAGGAGATTGA 1830 0.4153 MYKGRLGDKAQFGYVETDPSGRYGRFRDILGKGAVKVVYRAFDEVLGIEVAWNQVKLGDVFHSPDQLQRLYSEVHLLKNLDHDSIITFHDSWIDASCRTFNFITELFTSGTLREYRKMYPRVDIRAVKNWARQILNGLEYLHSHDPPVIHRDLKCDNIFVNGHLGQVKIGDLGLAAILRGSQHAHSVIGTPEFMAPELYEEEYNELVDIYSFGMCMIELFTSEFPYSECSNPAQIYKKVTSGKLPEAFYRIHDLEAQRFVGKCLANVSERLSAKELLLDPFLATDQLGSPLPSPTLPRKHTPTLNFTDAVEKEKTSISDQTKSTYMTITGSINNEEDDTVFLKVQISNKTGLTRNIYFPFNTINDTAIEVAMEMVKELEISDLEPLEIAEMIEEEISALVPTWKDWGNSKYQRQHSFNYEEEDDISNHHPFFSSSSRSSSHGSLPMFGSSYKNNIHLCGNHYPFSQDWSQDDLFMNDDESSQSSMNSLKCFNFHCCDSSNEDEHHPTLVVGAEPLSFTPKASKMSTRFCPREEADFIKQFYNMRLRMDSHSHMCHGSGHGYKRLTRIRSYVDVRRQQLQRSLMEEMHKKRMFKTVGTIQNIGFQNPEGD. 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10939 609 FunFam probable serine/threonine-protein kinase WNK9 107 287 - -
Seca4g10939 609 FunFam Probable serine/threonine-protein kinase WNK1 8 105 - -
Seca4g10939 609 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
Seca4g10939 609 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 485 - -
Seca4g10939 609 Gene3D Transferase(Phosphotransferase) domain 1 107 287 - -
Seca4g10939 609 Pfam Protein kinase domain 28 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10939 609 SUPERFAMILY Protein kinase-like (PK-like) 26 325 IPR011009 -
Seca4g10939 609 CDD STKc_WNK 22 282 - -
Seca4g10939 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Seca4g10939 609 SMART serkin_6 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10939 609 ProSiteProfiles Protein kinase domain profile. 24 282 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10939 Seca-Chr4 247075974 247079717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10939 12 424 MAP Kinase Kinase Kinase AT3G51630 68.841 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Seca4g10939 Pkinase 6.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10939 K08867 - gmx:100816187 1011.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10939 4 247075974 247079717 Seca4g10939 4 247075974 247079717 ECH
Seca4g10939 4 247075974 247079717 Seca2g01205 2 19532795 19535200 PCT