Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10935 ATGGGGAATTACAGGTTTAAGTTATCAGATATGATTCCAAATGCTTGGTTTTACAAGCTGAGGGATATGGGGAGAGGAAAAAAGCAAACAAACACTTCCTCCAGAAACAAAAAACAATCTTTATCAACCTCAACCACACAGTCATCAAAACCAAAACAACCCCACCAATGCAATCCCAGAAAATCATACTACTTCACAAGAGAGCTTAACCAAAGCAGCAACAGATTCTACACCTCACCAGCAAACACCCCAAAAATCCTACAAACCAACAATTCCCCTGAACCACCCAGAAGACCATCCAAACAGAGAACCACCAGAAGAAGAAGAAGCACAAGAAGAGTTTCTTCCCCAAAGCTTGTCACTTCCTCTGGTTGTAGCTGCCGCACCACCCTTGAATCCGTGTGGACCAAATCCGATTCCCCACCAGAACACTCTTCATCTCCATTTGATAGCTCTGCTGAGTCAGAATTCCCTGACCCAGAATTCAGAACAGACCGTGTTCTTCCTACTGAGTCATTCGATGAAATGGTTTCTTGTGCTTGCAAGTTAAGTTCCAACCCCATCACCACAGATATTGTTATCGATGTGGACAAGAATTCTCTAGCCAGAAAAGATGATAAGCTTGAAAGGTATGAATATGATACTTTTACAGAGCTGGAACTTCCTCCAATCATAACAAAACCATCCAAATTCAATGACTCTCTGACTCAGAGTGATACCAAGAAGAAAGAACCCAAACCCAGAAGAAGAATGGCCACACATGAAGAAAAAACCAACGAGGAAGCGTCTCTGAAGGTGAAAATTGTGAAGGAAGACACAACATCATCAATGAAAGAACAGAGGAATGGCCCTGTTAAGAGATTCTCTTCTTCTTCTTCTTCTTATTCTCACTCTGTGAATTCTCCAGGAGTGAAGCTTCGTGTCCACTCTCCGAGAATTGCTAGCCTGAAGGTTCAGTCTCATGGCCGGAAAAGCGTGTCGTCGACGGCGAGCTCTGGCTCCCGGAGAAGCCTCTCTGATAGCTTTGCAATAGTGAAGTCATCGTTCAACCCACAAAAGGATTTCAGAGAGTCAATGGTGGAGATGATTGTGCAGAATAACATAAGGGCCTCAAAGGATTTGGAAGATCTTCTTGCTTGTTACCTTTCTCTCAATTCAGATGAGTATCATGACCTCATCATCAAGGTGTTCAAGCAAATTTGGTTTGATTTGACTGAAAAATAA 1224 0.4273 MGNYRFKLSDMIPNAWFYKLRDMGRGKKQTNTSSRNKKQSLSTSTTQSSKPKQPHQCNPRKSYYFTRELNQSSNRFYTSPANTPKILQTNNSPEPPRRPSKQRTTRRRRSTRRVSSPKLVTSSGCSCRTTLESVWTKSDSPPEHSSSPFDSSAESEFPDPEFRTDRVLPTESFDEMVSCACKLSSNPITTDIVIDVDKNSLARKDDKLERYEYDTFTELELPPIITKPSKFNDSLTQSDTKKKEPKPRRRMATHEEKTNEEASLKVKIVKEDTTSSMKEQRNGPVKRFSSSSSSYSHSVNSPGVKLRVHSPRIASLKVQSHGRKSVSSTASSGSRRSLSDSFAIVKSSFNPQKDFRESMVEMIVQNNIRASKDLEDLLACYLSLNSDEYHDLIIKVFKQIWFDLTEK. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10935 407 MobiDBLite consensus disorder prediction 74 98 - -
Seca4g10935 407 NCBIfam uncharacterized plant-specific domain TIGR01568 343 405 IPR006458 -
Seca4g10935 407 ProSiteProfiles OVATE domain profile. 344 403 IPR006458 -
Seca4g10935 407 MobiDBLite consensus disorder prediction 316 335 - -
Seca4g10935 407 MobiDBLite consensus disorder prediction 115 153 - -
Seca4g10935 407 Pfam DNA-binding domain 1 40 IPR025830 GO:0003677
Seca4g10935 407 MobiDBLite consensus disorder prediction 227 304 - -
Seca4g10935 407 Pfam Transcriptional repressor, ovate 348 404 IPR006458 -
Seca4g10935 407 MobiDBLite consensus disorder prediction 29 59 - -
Seca4g10935 407 MobiDBLite consensus disorder prediction 278 303 - -
Seca4g10935 407 MobiDBLite consensus disorder prediction 236 277 - -
Seca4g10935 407 MobiDBLite consensus disorder prediction 25 59 - -
Seca4g10935 407 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 235 405 IPR038933 GO:0045892
Seca4g10935 407 MobiDBLite consensus disorder prediction 74 163 - -
Seca4g10935 407 MobiDBLite consensus disorder prediction 320 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10935 Seca-Chr4 247001677 247002900 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca4g10935 Ovate 7.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10935 - - aprc:113850281 459.144