Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10934 ATGGCGATTCCACCTCAAACGTTCCCAACCAGAAAACGACGACCCTCGGCGGAGTCGTTTATCTCTCCGAAGCTCACCGACCTCAACCTCCTTCAATCTCTGCTGCACCTCACTCACCAGATATCTTCTCTCAACCCAACCACCAGCCACTTCCTTCACAACCGCATTTCGTCCTCCACCATCCGCAAAACGCAGCTCCTTGGTGTCGTTTTCGAAGACCTGCTTCGCGTTTCAAATTCAAATTCGGCTAAAACTTCTTCAACCTCTCTCCTTCTCTGCCTTGAGGAAATGTACATCGTGCTGCACAGGATCAAAACCCTCGTTGAAGATTGCTTCAATGGAAGCAAGTTCTCCATTCTCATGCAAATTGAAAACATCGCCGACACCTTCAACAAACTCACCGGAGAGCTTTCCACGCTTCTTGATATCTTTCCTCTTCAAGAGCTCGACCTAAACGCTGACGTTCGGGAACTAGTTCTCCTCATCAGAAAACAGTGCTCCGAATCCAAGCCACTCCTCGAGGAGGAACAAATGGAACTCCGAAAAGATGTCGTTTCCATTCTCGAAGGGATCAAGAGGGAGATTGTTCCCAATCAGACACACCTGGCTTCAATTTTCGAGAAATTGGAGATTCGAGATTCTTCTAGCTGCAGAGCGGAGATTGAGAATTTACATGAAGAGATTCAGAATCGGAGCGAAGAACAATCGAAATCAGAGATCGTAGCGTTGATCGGGCTAGTTAGATTCGCCAAGTGTGTTCTCTTCGGTGCTTCCACGCCATCGCCGGGAAGTGAGAGTCTCCAGCGGAAACCGTCGTTGGAGATTACGGTTCCGGCAGATTACCGTTGCCCGATAAGCCTTGAGCTGATGCGGGACCCTGTCGTCGTGGCAACAGGACAGACGTATGATCGTGTATCCATCAAGCTCTGGATGGAATCTGGGCACAACACGTGTCCCAAAACAGGTCAAACACTGGCCCACACTGACCTCATTCCCAATCACGCCCTCAGGAATATGATAGCCATGTGGTGCCGTGAGCAGAGAATCCCGTTCGAAGCGGAAACGGTTACTGGTAAAATCAACGGCAGCATAACAAACAAAACAGCTTTGGAAGCCACCCGAATGACGGCGTCATTTTTAGTCAACAAGCTGAAGGTTCCGTTAACGGTTTCCGTTCCGGATTATCAGTCTATGGAAGACACAAACGCCGTCGTTTACGAGCTTCGGGTTCTAGCAAAAACAGACTCAGACAGCAGAGCCTGCATCGCCGAAGCTGGAGCCATCCCGCTTCTGGTTCGGTACCTCACCTCACAAAACCCGAGCCTTCAGGTTAACTCCGTGACGACGATCCTGAACCTATCGATTCTTGAAGCGAACAAGGCGATGATAATGGACACTGATGGCGCGTTGAACGGCGTCGCGGAAGTGCTTCGTTCCGGCGCCACGTGGGAGGCGAAGGCGAACGCGGCGGCGACAGTGTTCAGTTTATCCGGTGTGGCTGCGTTCAGGAAGAGGCTCGGGAGGAAGGCACGTGTCATCAGCGGGTTGATTGAGCTCGCGAAGATTGGACCCGAGGGAGCAAAGAGGGACGCGCTCGCCGCGATTCTGAACCTTGCGGCGGACCGCGAGACAGTGGCGAGGTTGGTGGAGTGCGGCACGGTTGAAATGACGGCGCAGGTCATGGCGGCGATGCCGGAGGAGGCAGTGACGATTCTCGAAGCGGTGGTGAAGCGCGGCGGGCTGGTAGCAGTTGCGGCGGCTTACGTGGGGATCAAGAAGTTGGGGACGGTGTTGAGGGAGGGATCGGAGAGGGCGAGGGAGAGCGCTGCGGCGACGCTGGTGACTATGTGTAGGAAGGGTGGATCGGAGATTGTGGCTGAGCTGGCGGCAATTCCAGGAGTGGAGAGGGTAATTTGGGAGTTGATGGCGGTGGGGAGCGTGAGAGGGAGGAGGAAGGCGGCGACGCTGTTGAGGATTCTCCGGCGTTGGGCGGCGGGATTGGACGGCGGAGAGAGTGAAGGGTTCTCAACTGCCACAGTGGTAAGTTCGTCAACTACTGTGGTTATTCCAACAACCAGTTCCTTAGCACAGTGA 2094 0.5377 MAIPPQTFPTRKRRPSAESFISPKLTDLNLLQSLLHLTHQISSLNPTTSHFLHNRISSSTIRKTQLLGVVFEDLLRVSNSNSAKTSSTSLLLCLEEMYIVLHRIKTLVEDCFNGSKFSILMQIENIADTFNKLTGELSTLLDIFPLQELDLNADVRELVLLIRKQCSESKPLLEEEQMELRKDVVSILEGIKREIVPNQTHLASIFEKLEIRDSSSCRAEIENLHEEIQNRSEEQSKSEIVALIGLVRFAKCVLFGASTPSPGSESLQRKPSLEITVPADYRCPISLELMRDPVVVATGQTYDRVSIKLWMESGHNTCPKTGQTLAHTDLIPNHALRNMIAMWCREQRIPFEAETVTGKINGSITNKTALEATRMTASFLVNKLKVPLTVSVPDYQSMEDTNAVVYELRVLAKTDSDSRACIAEAGAIPLLVRYLTSQNPSLQVNSVTTILNLSILEANKAMIMDTDGALNGVAEVLRSGATWEAKANAAATVFSLSGVAAFRKRLGRKARVISGLIELAKIGPEGAKRDALAAILNLAADRETVARLVECGTVEMTAQVMAAMPEEAVTILEAVVKRGGLVAVAAAYVGIKKLGTVLREGSERARESAAATLVTMCRKGGSEIVAELAAIPGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGESEGFSTATVVSSSTTVVIPTTSSLAQ. 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10934 697 ProSiteProfiles U-box domain profile. 276 350 IPR003613 GO:0004842|GO:0016567
Seca4g10934 697 Coils Coil 218 238 - -
Seca4g10934 697 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 263 355 IPR013083 -
Seca4g10934 697 Pfam Armadillo/beta-catenin-like repeat 416 454 IPR000225 GO:0005515
Seca4g10934 697 Pfam U-box domain 277 348 IPR003613 GO:0004842|GO:0016567
Seca4g10934 697 SUPERFAMILY RING/U-box 267 350 - -
Seca4g10934 697 PANTHER U BOX DOMAIN-CONTAINING 61 661 - -
Seca4g10934 697 SMART arm_5 415 455 IPR000225 GO:0005515
Seca4g10934 697 SMART Ubox_2 280 343 IPR003613 GO:0004842|GO:0016567
Seca4g10934 697 CDD RING-Ubox_PUB 278 330 IPR045210 -
Seca4g10934 697 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 426 468 IPR000225 GO:0005515
Seca4g10934 697 Gene3D - 378 589 IPR011989 -
Seca4g10934 697 SUPERFAMILY ARM repeat 396 660 IPR016024 -
Seca4g10934 697 FunFam RING-type E3 ubiquitin transferase 274 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10934 Seca-Chr4 246996516 246998609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10934 9 695 U-box Gene Family AT5G01830 54.703 0.0 715
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10934 - - tpra:123922727 991.49