Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10933 ATGGGTGCACAAAACGGCATCGTCGAAGACACAGGGATAGAGAAAGAGCAAGAGCAAGAACCATGGACGACAACAGAGGAGGAACCAACAGGGGTCGTTTTGTTCGGGAAATACGAGCTGATAAAGCTTCTTGGTGTTGGCGCGTTCGCGAAGGTGTACCACGCGCGTGACGTGAACACGGGGCAGAGCGTGGCGGTGAAGGCCGTGAGCAAACGCAAAGTCCAGAGAAACGGTTACGCGGCACACGTTATGCGCGAAGTCTCTATCATGCGCCGGCTGCGCCACCCACACACGGTGAAACTCTTCGAGGTGTTGGCCACGAAGACCAAAATCTACTTCATCATGGAGTTCGCGGCCGGCGGCGAGCTCTTCGGCGTGGTCGCCGCCGAGGGACGGTTGACGGAGGATCTTTCCCGGCGATACTTCCGTCAACTAATCTCCGCCGTCAAGTACTGCCACTCCCGCGGCGTCTTCCACCGTGACCTCAAGCTCGACAACCTCCTCGTCGACGATAACATGGACCTCAAAGTCACTGATTTCGGGTTGGGCGCGATTCAGGAACAGATCCGATCCGACGGGATGCTCCACACCGTTTGTGGAACTCCTGCTTACGTGGCACCGGAGATTCTCGCGAAAAAGGGCTACGACGGTGCCACGGTGGATGTATGGTCATGCGGCGTCGTTTTGTTTGTGCTCACTGCTGGGTATTTACCCTTCAATGATTACAATATTACGGTTTTGTACCGGAAGATATACAGGGGACAGTTTCGGTTCCCGAAATGGATGTCACATGATCTTAAGAATCTCTTATCAAGGCTGTTGGACACAAATCCCGAGACGAGAATCACTTTAGATGAAGTCATGGAGGACCCATGGTTTAGTCGGGGTGGGTATGCGGATCTTTGGACCCGACCCATTGAACCTGAATGGGATGAGAACCGGGTCGCGACAAAGAGTTTGAACGCGTTTGATTTGATATCTTTTTCATCCGGGTTTGACATGTCGGGTTTGTTTACCGATCCGGAATATTCTGAATGCGTGGAACGGTTCATTACGGGGGAGAAAACGGAGAGGGTAGCGAAAAACGTGGAAGAGGTGGCGGAGAAAGAGAGAGTGACGGCGAGGAAAGAGAAGGACGGTTGCGGAGGATTGAAGCTAGAAGGGTTGGATGGTACTTTTGTGATTTTGGTTGGGTTTTACCGGTTAACGGATGAATTGGTTGTGGTTGAGGTGAAGAGGAGAGAGAGAAGAGTGGGAGGCAGTGCACTTTTTTGGAGAGATGCATTAAGACCACAGCTTCTTGCATTATCTTATCAATAA 1320 0.5197 MGAQNGIVEDTGIEKEQEQEPWTTTEEEPTGVVLFGKYELIKLLGVGAFAKVYHARDVNTGQSVAVKAVSKRKVQRNGYAAHVMREVSIMRRLRHPHTVKLFEVLATKTKIYFIMEFAAGGELFGVVAAEGRLTEDLSRRYFRQLISAVKYCHSRGVFHRDLKLDNLLVDDNMDLKVTDFGLGAIQEQIRSDGMLHTVCGTPAYVAPEILAKKGYDGATVDVWSCGVVLFVLTAGYLPFNDYNITVLYRKIYRGQFRFPKWMSHDLKNLLSRLLDTNPETRITLDEVMEDPWFSRGGYADLWTRPIEPEWDENRVATKSLNAFDLISFSSGFDMSGLFTDPEYSECVERFITGEKTERVAKNVEEVAEKERVTARKEKDGCGGLKLEGLDGTFVILVGFYRLTDELVVVEVKRRERRVGGSALFWRDALRPQLLALSYQ. 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10933 439 Gene3D Transferase(Phosphotransferase) domain 1 120 297 - -
Seca4g10933 439 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Seca4g10933 439 FunFam Non-specific serine/threonine protein kinase 118 300 - -
Seca4g10933 439 CDD CIPK_C 321 433 - -
Seca4g10933 439 Pfam Protein kinase domain 38 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10933 439 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g10933 439 SUPERFAMILY Protein kinase-like (PK-like) 34 330 IPR011009 -
Seca4g10933 439 Gene3D Kinase associated domain 1, KA1 315 438 - -
Seca4g10933 439 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 31 413 - -
Seca4g10933 439 ProSiteProfiles NAF domain profile. 315 339 IPR018451 GO:0007165
Seca4g10933 439 SMART serkin_6 38 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10933 439 ProSiteProfiles Protein kinase domain profile. 38 293 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10933 439 FunFam Non-specific serine/threonine protein kinase 19 119 - -
Seca4g10933 439 Pfam NAF domain 318 376 IPR004041 GO:0007165
Seca4g10933 439 Gene3D Phosphorylase Kinase; domain 1 9 119 - -
Seca4g10933 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 157 169 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10933 Seca-Chr4 246956084 246957403 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10933 33 439 CBL-interacting serine-threonine protein kinases AT2G30360 58.495 7.13e-169 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca4g10933 Pkinase 3.6e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10933 - K12761 gmx:100788245 509.99