Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10921 ATGGCCTCGCACGGGTATCTCTCTGTTTTCTTCCATGCCTTTGTGATTGCATCTCTTGCAACCACAGGTTTCTCACAACTGTCAGCTAATTACTATGACTACACGTGTCCTAACGCTTTGAGCACCATTAAAAGTGTCGTGGAGGGTGCAGTGTGGAAAGAGCGCCGTATGGGCGCGTCTTTGCTACGATTGCACTTCCATGATTGCTTTGTTAATGGTTGTGATGGTTCAATACTTCTAGATCCCACATCATCCATTGACAGTGAAAAAAATGCAGGGCCCAATTTCCAATCTGCTAGAGGATTTGAAGTGGTGGATGATATCAAGAAGGCAGTAGACGCAGCATGTGGAAAACCAGTTGTTTCTTGCGCTGACATTTTGGCCGTTGCCGCTCGCGACTCTGTAGTTGCGTTAGGGGGACCAACATGGGAGGTGCAATTGGGGAGAAGAGACTCGACGACAGCAAGCCGTGATGCTGCAAATAAAGACATTCCAGCACCATTTTTCAGCCTCTCTCAACTTATTGAGAATTTCAAGAACAAAGGTCTAGATGAGAAGGATCTGGTGGTTCTTTCTGGAGGACACACGATTGGATATGCACGTTGTGCTACGTTTAGGGACCGTATCTACAAGGACACTGACATCAATTCCGAGTTTGCACAACAGCTTAAGTACATCTGTCCCATAAATGGAGGTGACTCAAACCTTTCTCCTTTGGACCCAACAGCAGCGAACTTTGACGTAGCTTACTACTCTAATTTACTTCAAACCAAAGGGCTTCTTCACTCTGATCAGGAACTCTTCAACGGTGGTTCCACAGATGCACTTGTTAAACAGTACAGCTACTATCCCGAAGCTTTCTTCCAAGACTTCGCCGAATCGATGATTAAGATGGGAAATATTCAGCCCCTCACTGGGGATCAAGGTGAAATACGTGTTGACTGCAAACATAGAATGGCCTCGCATGTGTATTTTTCTGTTGTCCTCTATGGTTTTGTGTTTGCATCTCTTGCAACCACAGGTATCTCACAATTGTCACCTAATTACTATGATTACACGTGTCCTAATGCTCTGAGCACCATTAAAAGAGTCGTGGAGAGTGCCGTGTGGAAAGAGCCCCGAATGGGTGCTTCTTTGCTACGATTGCACTTCCATGATTGCTTTGTTAATGGTTGTGACGGTTCACTCCTTCTAGATTCTACATCCTCCATTGACAGTGAAAAGTTGTCAAATGCTAATAAACAGTCAGCTAGAGGTTTTGAAGTGGTGGATGAGATCAAGAAGGCCGTGGATGAAGCATGTGGAAAACCAGTTGTTTCTTGCGCTGACATCTTAGCCGTTGCCGCACGAGACTCTGTAGTTGCCTTAGGGGGGCCAACATGGAAAGTGAGAGTGGGGAGAAGAGACTCGACCACAGCAAGCCGTGCTGCTGCAGATGCTAACATTCCAGCACCATTTTTCAGCTTTTCTCAACTTATTGACAACTTCAAGAGCCATGGTCTAGATGAGAAGGACCTGGTGGTTCTTTCTGGAGCCCACAGCATTGGATATGCACGTTGTGTTACGTTTAGGGACCGTATCTACAATGACTCTAACATCAATTCCCACTTTGCACAACAACTTAAGTACATTTGCCCCAGAAATGGAGGTGACTCCAACCTTGCTCCTTTGGACCCCACAGCCGCGCGCTTTGACGCAGCCTACTACTCTAATTTAATGAAAGAGAGAGGACTTCTTCACTCTGATCAGGAACTCTACAGTGATGATTCTACAAATGGACTTGTTAAAGAGTACAGCGACGATACCCAAGATTTCTATCAGGACTTCGCCAACTCCATGATTAAGATGGGAAATATGCAGCCCCTCACTGGGAATCAAGGTGAAATACGTGTTAACTGCAGGAGAGTCAACTACTAA 1917 0.4564 MASHGYLSVFFHAFVIASLATTGFSQLSANYYDYTCPNALSTIKSVVEGAVWKERRMGASLLRLHFHDCFVNGCDGSILLDPTSSIDSEKNAGPNFQSARGFEVVDDIKKAVDAACGKPVVSCADILAVAARDSVVALGGPTWEVQLGRRDSTTASRDAANKDIPAPFFSLSQLIENFKNKGLDEKDLVVLSGGHTIGYARCATFRDRIYKDTDINSEFAQQLKYICPINGGDSNLSPLDPTAANFDVAYYSNLLQTKGLLHSDQELFNGGSTDALVKQYSYYPEAFFQDFAESMIKMGNIQPLTGDQGEIRVDCKHRMASHVYFSVVLYGFVFASLATTGISQLSPNYYDYTCPNALSTIKRVVESAVWKEPRMGASLLRLHFHDCFVNGCDGSLLLDSTSSIDSEKLSNANKQSARGFEVVDEIKKAVDEACGKPVVSCADILAVAARDSVVALGGPTWKVRVGRRDSTTASRAAADANIPAPFFSFSQLIDNFKSHGLDEKDLVVLSGAHSIGYARCVTFRDRIYNDSNINSHFAQQLKYICPRNGGDSNLAPLDPTAARFDAAYYSNLMKERGLLHSDQELYSDDSTNGLVKEYSDDTQDFYQDFANSMIKMGNMQPLTGNQGEIRVNCRRVNY. 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10921 638 FunFam Peroxidase 483 616 - -
Seca4g10921 638 PRINTS Haem peroxidase superfamily signature 187 202 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 PRINTS Haem peroxidase superfamily signature 557 572 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 SUPERFAMILY Heme-dependent peroxidases 344 637 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 ProSitePatterns Peroxidases proximal heme-ligand signature. 187 197 IPR019793 -
Seca4g10921 638 FunFam Peroxidase 165 298 - -
Seca4g10921 638 FunFam Peroxidase 30 172 - -
Seca4g10921 638 CDD secretory_peroxidase 344 636 IPR033905 GO:0004601|GO:0042744
Seca4g10921 638 SUPERFAMILY Heme-dependent peroxidases 26 316 IPR010255 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 FunFam Peroxidase 348 487 - -
Seca4g10921 638 ProSiteProfiles Plant heme peroxidase family profile. 26 319 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 PRINTS Plant peroxidase signature 293 306 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 PRINTS Plant peroxidase signature 186 198 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 PRINTS Plant peroxidase signature 237 252 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 PRINTS Plant peroxidase signature 253 270 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 Gene3D Peroxidase, domain 2 165 298 - -
Seca4g10921 638 Gene3D Peroxidase, domain 2 483 616 - -
Seca4g10921 638 PANTHER PEROXIDASE 72-RELATED 25 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 Pfam Peroxidase 362 601 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 Pfam Peroxidase 44 281 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 Gene3D - 30 316 - -
Seca4g10921 638 ProSiteProfiles Plant heme peroxidase family profile. 344 637 IPR002016 GO:0004601|GO:0006979|GO:0020037
Seca4g10921 638 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601
Seca4g10921 638 CDD secretory_peroxidase 26 315 IPR033905 GO:0004601|GO:0042744
Seca4g10921 638 Gene3D - 348 634 - -
Seca4g10921 638 ProSitePatterns Peroxidases proximal heme-ligand signature. 505 515 IPR019793 -
Seca4g10921 638 ProSitePatterns Peroxidases active site signature. 376 387 IPR019794 GO:0004601
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10921 Seca-Chr4 246853807 246862493 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10921 343 637 Peroxidase AT5G05340 59.732 2.32e-122 364
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10921 K00430 - vvi:100232945 677.167