Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10919 ATGGATGAAGATGGGCGTATACTCTCTCCGTCCATCCCCTTGGTGAATGACTCCTCAGAGCTCAACTCGGAGAGTTTTTACACTTTCTACAACAACTCCTCTGTCATAGGTGGTGCAAGCAACATTGTTCAGCCCATCATCGAGTATGCTTGTCGTCATCGTGTTGGCATCATAGTGCTATCTGGATCAGGTTTCGTTTCCGATGTTACACTTCTCCACCCCATGACCCATATTGCTCCTGCTTTGTCTATCATCGGACACTTCAACATTGTATCTTTCACAGGCACTTATATGGGTGGTCATTTTCCTCCACTCTCCTCTCCCACCCCTGCTTGTTCTTCTTTTGTGATTAACCTCTATGGCTTCCCTAGTCAGGTGTTCTGTGGACTTGTTGGAGGAAGGGTTATAGCCGCAAGTCGTGTGGTTGTTGTGGCATCAACATTTAAGAAGTTTGAGTACCACATTGTTCCTGGAATTGTTGATGAAGTTGAAGAGAGTGATCCCACAAATGTTGCGGCCATTAATGTTGATGCAAGTGATGCAAATGTCATCACCAACAACACCGACATTGCCATGACTAATAATAAGTCTTCTTTCGGATATAATATTAAAAAATTATATGCCAGCTCCCATCTCGATCGGCTTGGCCTCACTTCAACCTTTGACACTCTTGCTATAAATTGTTCATCGTCTTGCTTGTTCTACCCCATACCCTTACAAATTGCTGAAGAAAAGTGTTTACTATCTCTATCCATTCCCTCGGTGAGTGACTCCTCAGAGCTCAACTCGGAGAGTTTTGACACTTTCTACAATAACTCCTCTGTCATAGGTGGTGCAAGCAACGGATACATGATCTCCCTTTCCAACAATGACAATTATGAGGAAGTGTCAAAATCAGTCATATTTGAAATTTGTGCTGGAAATGACATTGTTGTTCAGCCCATCATCGAGTATGCTTGTCGTCGTCGTGTTGGCATCGTAATGCTAACTGGTTCAGGCTTCCCAAATCAGGTGTTCGATGGAATTGTTGGCGGAAGAGTTATAGCTGAGAGTCATGTGGTTGTTCTGGCATCAACATTGAAGAAGTTTGAGTACCACATTGTTCCTGGAATTGTTGAGGAAGTTAAAGAGGGTGACCCCACACATGTTGCTGACAATAATGCTAATGCAAGTGATGGTAATGGCATCACCAACAACATCGACATTGTCATGACTAATAATATGTCTTCTTTTGCCTTGCTAGAACAGAACGATTGTCGCTGCCAACCTCTCCGTGACGCTGCCGCCCCTCCTCTCTATGACGCCGTCGCCCCTCCTATTTATGATGCCACTACCGCTCCTCCCCGTGACGTCGCCGCACCACACCAAGTCGTCATAGGTAATGGCCAATTGACCATCAAAAGCACTGATGAGAATTGCCTATTACTTATAGGTTTTTGGAGGAAGCACTTGTTGTTAGTTGTTCTTTTCAATGTGCAAACGCTTCCACCAAATTCCATTTCGCGGCCCATGGGTTTCTCAGAGGAACACCTTCTTGCGCGGTTACAAGTTCTCTCATCCAACTGA 1566 0.447 MDEDGRILSPSIPLVNDSSELNSESFYTFYNNSSVIGGASNIVQPIIEYACRHRVGIIVLSGSGFVSDVTLLHPMTHIAPALSIIGHFNIVSFTGTYMGGHFPPLSSPTPACSSFVINLYGFPSQVFCGLVGGRVIAASRVVVVASTFKKFEYHIVPGIVDEVEESDPTNVAAINVDASDANVITNNTDIAMTNNKSSFGYNIKKLYASSHLDRLGLTSTFDTLAINCSSSCLFYPIPLQIAEEKCLLSLSIPSVSDSSELNSESFDTFYNNSSVIGGASNGYMISLSNNDNYEEVSKSVIFEICAGNDIVVQPIIEYACRRRVGIVMLTGSGFPNQVFDGIVGGRVIAESHVVVLASTLKKFEYHIVPGIVEEVKEGDPTHVADNNANASDGNGITNNIDIVMTNNMSSFALLEQNDCRCQPLRDAAAPPLYDAVAPPIYDATTAPPRDVAAPHQVVIGNGQLTIKSTDENCLLLIGFWRKHLLLVVLFNVQTLPPNSISRPMGFSEEHLLARLQVLSSN. 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10919 521 ProSiteProfiles PPC domain profile profile. 26 169 IPR005175 -
Seca4g10919 521 Gene3D - 38 163 - -
Seca4g10919 521 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 36 176 IPR014476 GO:0003680
Seca4g10919 521 CDD DUF296 42 146 IPR005175 -
Seca4g10919 521 SUPERFAMILY AF0104/ALDC/Ptd012-like 39 153 - -
Seca4g10919 521 Pfam Plants and Prokaryotes Conserved (PCC) domain 40 149 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10919 Seca-Chr4 246832327 246836509 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10919 41 157 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 33.613 4.92e-12 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10919 - - cave:132164508 112.079