Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10917 ATGGTTGAAGATGGGCGTATACTCTCGCCGTCCATCCCCTTGGTGAATGACTCCTCGGAGCTCAACTCAGAAAGTTTTGACACTTTCTACAACAACTCCTCTGTCATAGGTGGTGCAAGCAGCGAATACACGATCTCCCTCTCCAACAACGACAATTATGAGGAAGTGTCAAAGTCAGTCATCTTTGAAATCCCTTTTGGAAAATACATTGTTCAGCCCTACATTGAGTATGCTTGTCGTCGTCGTGTTGGCATCGTAGTGCTATCTGGCTCAGATTTTGTTTCCGATGTTACCTTTCTCAATCCCATGACCCATATTGCTCCTGCATTGTCTATCATCGGAAACTTCAACATTATATCTTTCACAGGAACTTATATGGGTGGTCATTTTCCTCCACTCTCCTCTCCCACCCCTGCTTGTTCTTCTTTTGTGATTCCCCTCTATGGCTTCCCTAGTCAGGTGTTCTGTGGACTTGTGGGAGGAAGGGTTATAGCTGCAAGTCGTGTGGTTGTTGTGGCATCAACATTTAAGAAGTTTGAGTACCACATAGTTCCTAGAATTGCTGAGGAAGTTGAAGAGAGTGACCCCACAAATGTTGCGGCCATTAATGTTGTTGCAAGTGAGGCTAATGGCATCACCAGCAACACCGGCATTGCCACGACTAATAATATGTCTTCTTTCGGTATTACCAATTTAACCTCACTGAATCACCAACTCCCTTTTCCATAA 729 0.4458 MVEDGRILSPSIPLVNDSSELNSESFDTFYNNSSVIGGASSEYTISLSNNDNYEEVSKSVIFEIPFGKYIVQPYIEYACRRRVGIVVLSGSDFVSDVTFLNPMTHIAPALSIIGNFNIISFTGTYMGGHFPPLSSPTPACSSFVIPLYGFPSQVFCGLVGGRVIAASRVVVVASTFKKFEYHIVPRIAEEVEESDPTNVAAINVVASEANGITSNTGIATTNNMSSFGITNLTSLNHQLPFP. 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10917 242 ProSiteProfiles PPC domain profile profile. 54 197 IPR005175 -
Seca4g10917 242 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 56 204 IPR014476 GO:0003680
Seca4g10917 242 SUPERFAMILY AF0104/ALDC/Ptd012-like 58 182 - -
Seca4g10917 242 Pfam Plants and Prokaryotes Conserved (PCC) domain 60 177 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10917 Seca-Chr4 246829297 246830025 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10917 61 193 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 32.593 8.86e-14 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10917 - - cave:132164508 112.464