Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10916 ATGACCCATACTGCTCCTGCTTTGTCTATCACCAGACACTTCAACATTGTATCTTTCACGGGAACTTACATGGGTGGTTATTTTCCTCTACTCTCCTCTCCCACCCCTGCTTGTTCTTCCTTTGCGATTAACCTCTCAGGCTTCCCAAGTCAGGTGTTAGGTGGAATTGTTGGAGGAAAGGTTATAGCTGCGAGTCGTGTGGTTGTTGTGGCGTCATCATTCAAGAAGTGGTGCAAGCAGCGAATACATGATTCCCTCTCCAACAATGACAATGATAAGGAAGTGACAAAATCAGTCATCTTTGAAATCCCTGCTGGAAAAGATATTGCTCAGCCCATCATCGAGTATGCTCGTCGTTATCGTATTGGCATCGTAGTGCTATCTGGTTCAGGTTTCGTTTCTAATGTTACCCTTCTCCACCCCATGACCCATATTGCTCCTGCTTTGTCTATCACCGGACACTTCAACATTGTATCTTTCACAGGCACTTACATGGGTGGTCATTTTCCTCCACTCTCCTCTACCACCCCTGCTTGTTCTTCTTTTGTGATTAACCTCTCAGGCTTCCCAAATCAGGTGTTCTGTGGACTTATTGGAGGAAGGGTTATAGCTGCAAGTCGTGTGGTTGTTGTGGCATCAACATTCAAGAAGTTTGAGTACCACATTGTTCCTGGAATTGCTAAGGAAGTTGAAGAGAGTGACCCCACAAATGTTGCGGCCATTAATGCTAATGGCATTACCAACAACACCGGCATTGCCATGACTAATAATATGTCTTCTTTCGGTATTACCAATTTAACCTCACTGAATCACCAACTCCCTATTCCATTAAGGAAGAACGTGTATGAAGACTACATTGTTGGTCAAAGAAAAACAAGTGCAGATGTTCAATATCATCTATTTTTGGTTTCAAATGCTATAAATTGTTCATCGTCTTGCTTTCTCTATCCCATTACGTTAAAAATGGTTGAAGATGGGCGTATACTCTCTCCGTCCATCCCCTTGGTGAATGACTCCTCAGAGCTCAACTCGGAGAGTTTTGATACTTTCTACAATAAATCCTCTGTAATAGGTGGTGCAAGGAGTGAGTACACGATCTTCCTCTCCAACAACGACAATTATGAGGAAGTGTCAAAATCAGTCATCTTTGAAATCCCTGCTGGAAAAGACATTGTTCAGTCCATCATCGAGTATGCTTGTCGTCATCGTGTTTGCATCGTAGTGCTATCTGGATCAGGTTTCGTTTCCGATGTTACACTTCTCCACCCCATGACCCATATTGCTCCTGCTTTGTCTATCATCGGACACTTCAACATTGTATCTTTCACAGGCACTTACATGGGTGGTCATTTTCCTCCACTCTCTTCTCCCACCCCTGCTTGTTCTTCTTTTGTGATTAACCTCTCAGGCTTCCCTAGTCAGGTGTTCTATGGACTTGTTGGAGGAAGGGTTATAACTGCAAGTCGTGTGGTTTTTGTGGCATCAACATTCAACTAG 1497 0.4355 MTHTAPALSITRHFNIVSFTGTYMGGYFPLLSSPTPACSSFAINLSGFPSQVLGGIVGGKVIAASRVVVVASSFKKWCKQRIHDSLSNNDNDKEVTKSVIFEIPAGKDIAQPIIEYARRYRIGIVVLSGSGFVSNVTLLHPMTHIAPALSITGHFNIVSFTGTYMGGHFPPLSSTTPACSSFVINLSGFPNQVFCGLIGGRVIAASRVVVVASTFKKFEYHIVPGIAKEVEESDPTNVAAINANGITNNTGIAMTNNMSSFGITNLTSLNHQLPIPLRKNVYEDYIVGQRKTSADVQYHLFLVSNAINCSSSCFLYPITLKMVEDGRILSPSIPLVNDSSELNSESFDTFYNKSSVIGGARSEYTIFLSNNDNYEEVSKSVIFEIPAGKDIVQSIIEYACRHRVCIVVLSGSGFVSDVTLLHPMTHIAPALSIIGHFNIVSFTGTYMGGHFPPLSSPTPACSSFVINLSGFPSQVFYGLVGGRVITASRVVFVASTFN. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10916 498 ProSiteProfiles PPC domain profile profile. 375 498 IPR005175 -
Seca4g10916 498 CDD DUF296 100 213 IPR005175 -
Seca4g10916 498 SUPERFAMILY AF0104/ALDC/Ptd012-like 379 497 - -
Seca4g10916 498 ProSiteProfiles PPC domain profile profile. 93 236 IPR005175 -
Seca4g10916 498 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 221 - -
Seca4g10916 498 CDD DUF296 382 495 IPR005175 -
Seca4g10916 498 Pfam Plants and Prokaryotes Conserved (PCC) domain 98 216 IPR005175 -
Seca4g10916 498 Pfam Plants and Prokaryotes Conserved (PCC) domain 12 75 IPR005175 -
Seca4g10916 498 Pfam Plants and Prokaryotes Conserved (PCC) domain 380 497 IPR005175 -
Seca4g10916 498 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 376 498 IPR014476 GO:0003680
Seca4g10916 498 Gene3D - 96 235 - -
Seca4g10916 498 Gene3D - 378 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10916 Seca-Chr4 246823060 246828543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10916 382 498 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 34.454 8.42e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10916 - - aew:130771067 126.331