Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10908 ATGGCTTCTGGGCAGCGTAAAAAAGCAGCTATGCAGCACAAGTTGCAACAACTTCGATCCGTCACAAATTCCAGTGCTGTGAACAAAGCCTCAATCATTGTGGATGCCACCAGATACATAGAGGAGTTGAAGCAAAAAGTGGAGGGATTGAACTCTGAGCTTGGAACCGCTGAATCCTCATCAACCTCCCAAGATAAACTACCTATGGTGCTTATTGTCACCGTAGAAACCCTAGAAAAGGGTTTCCTTATTAATGTGTTTTCAGAAAGGAATTGCCCTGGTATGCTTGTGGCAATACTTGACGCCTTTGAAGAACTGGGTCTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTGGGAGGAGAAAGTCAAGAGAATGAGAGCATCGACGCGCAAGTGGTGAAGCAAGCAGTGCTACAAGCAATCAACAACATGGATTAA 462 0.4502 MASGQRKKAAMQHKLQQLRSVTNSSAVNKASIIVDATRYIEELKQKVEGLNSELGTAESSSTSQDKLPMVLIVTVETLEKGFLINVFSERNCPGMLVAILDAFEELGLDVLDARVSCEDTFQLEAVGGESQENESIDAQVVKQAVLQAINNMD. 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10908 153 CDD ACT_UUR-ACR-like 93 149 - -
Seca4g10908 153 Coils Coil 33 60 - -
Seca4g10908 153 ProSiteProfiles ACT domain profile. 84 153 IPR002912 -
Seca4g10908 153 Gene3D - 1 68 IPR036638 GO:0046983
Seca4g10908 153 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 57 IPR036638 GO:0046983
Seca4g10908 153 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10908 Seca-Chr4 246685178 246687254 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10908 5 129 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 30.128 5.50e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10908 - - ccaj:109816195 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10908 4 246685178 246687254 Seca4g10908 4 246685178 246687254 ECH
Seca4g10908 4 246685178 246687254 Seca8g00821 8 10901777 10904287 ECH
Seca4g10908 4 246685178 246687254 Seca6g02002 6 79077159 79079628 ECH
Seca8g01425 8 24208227 24209666 Seca4g10908 4 246685178 246687254 ECH
Seca4g10908 4 246685178 246687254 Seca8g01425 8 24208227 24209666 ECH