Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10907 ATGGCTTCTGGGCAACGTAAAAAAGCAGCTATGCAGCACAAGTTGCAGCAACTTCGATCCGTCACAAATTCCAGTGCTGTGAACAAAGCCTCAATTATTGTGGATGCCACCAGATACATAGAGGAGTTGAAGCAAAAAGTGGAAGGATTGAACTCTCAGCTTGGAACCGCTGAATCTTCATCAACCTCTCAAGATAAACTGCCTATGGTCACCGTAGAAACCCTAGAAAAGGGTTTCCTTATTAATGTGTTTTCAGAAAGGAATTGCCCTGGTATGCTTGTGGCAATACTTGACGCCTTTGAAGAACTGGGTCTTGATGTGCTTCATGCTAGGGTTTCTTGTGAAGACACTTTCCATCTAGAAGCTGTGGGAGGAGAAAGTCAAGAGAATGAGAGTATCGACGCGCAAGTGGTTAAGCAAGCAGTGCTGCAAGCAATCAACAACATGGATTAA 453 0.4415 MASGQRKKAAMQHKLQQLRSVTNSSAVNKASIIVDATRYIEELKQKVEGLNSQLGTAESSSTSQDKLPMVTVETLEKGFLINVFSERNCPGMLVAILDAFEELGLDVLHARVSCEDTFHLEAVGGESQENESIDAQVVKQAVLQAINNMD. 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10907 150 CDD ACT_UUR-ACR-like 90 146 - -
Seca4g10907 150 Coils Coil 33 60 - -
Seca4g10907 150 Gene3D - 1 68 IPR036638 GO:0046983
Seca4g10907 150 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 146 - -
Seca4g10907 150 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 57 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10907 Seca-Chr4 246668310 246670985 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10907 11 144 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 26.000 4.21e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10907 - - ccaj:109816195 259.225