Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10892 ATGACTTTGCAGGGAAGTTCCCTACACTTGTTACTCACCAAGAATCTCGAGTCAAAGGTTAATGAGACTAAGGCTATGGTCAAATTCCAACTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTGCGAAATGTTAATATGGAGGAAAAGCAAATCTTCCAAAATGTACAACTGAGTGTTAACTTCCTTGTCTCCTTGTTGAAAAAGAATTGGCAAAATGTGAGTCCACTTTCAGAATATCTTTGCTCTGTTAGCTTCTATTTAATGGCGTTTTCTTTTAAGTTATATGTTCTTGGATTTATTGGTGTTATTTAG 312 0.3686 MTLQGSSLHLLLTKNLESKVNETKAMVKFQLKKVLCMGVAVRNVNMEEKQIFQNVQLSVNFLVSLLKKNWQNVSPLSEYLCSVSFYLMAFSFKLYVLGFIGVI. 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10892 103 Gene3D - 8 79 - -
Seca4g10892 103 Pfam Ribosomal protein L1p/L10e family 13 74 IPR028364 -
Seca4g10892 103 SUPERFAMILY Ribosomal protein L1 11 74 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10892 Seca-Chr4 246540339 246540650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10892 14 73 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 88.333 3.51e-31 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10892 K02865 - gmx:100305550 111.694