Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10875 ATGGATGATAAACGTGGAACTTCTCATCTCAAAACTACTCATGATCATTTTCGAATTGAAGTTGATAACTTTACACCTCCTTCAATGCCCTTTTCTCCTTCATCAATTTTTGCCCCTTACTCTGATTTTCCACCTGGTTTCAGCCCAACAGCGTTGTTTAATTCACCTCTGTTTCTCTCTTCTCCTAATATGCCTGCACCTTATACAACTGTTGAGCCTTCTTCTGGTCAGAATCAGAGCTTCAACCAGAGAAACAGTTCAACTGAACAACATAACAACAAGGAAGAAGAGAGAAAGTACTCTGACATCTCTTTCCAAACCCAAACAAAGCAGCAAGTGCCTCTCTTTCAATCTTCCTCAAGCATGTTTCAAGCACAGGAGCCAATAAAGAAACAGGACAAGTTGATGTTCAATGAAACTACAAAGCAAACTGATTTTTCATTTCAGAGGACAGCAACAAAATCTGAGAATCCATCCACTCAAGGCTTCTCAGAAATGGCCACAATCAAACCTGAAATACAAAGCAATTCTGCTTCTGGGTCTTGTTATTTAAACTACACCAATGCTTCTATGTCTATTAGAGAACAAAGGAAATCAGAAGATGGGTACAAGTGGAGGAAATATGGAGAGAAACAAGTGAAAGGAAGTGAAAATCCAAGAAGCTATTACAAGTGCACACATTCAAGTTGTCCAATGAAGAAGAAAGTTGAAAGGTCTTTGGATGGACATATTACTGAAATAGTATACAAAGGAAGTCATAACCATCCCAAGCCACAGTCTACCAAAAGAACAAGTTCTCACTCAATTCATCAACCTTCTTCATCATGTACTACCTCAGGGATTTCTGATCATTCTATGGGAGAGGAAGACTTTGAGCAAACATCACATACTAGTTATTCTGGAGGGGATGATGATGACCTTGGACCAGATGCCAAAAGATGGAAGGGAGAGAATGAAAATGATGGCTATTCCTATTCAACTGCAGGGAGTAGAACTGTTAAAGAGCCTAGAGTTGTGGTTCAAACCACAAGTGAAATTGATATACTTGATGATGGCTACAGGTGGAGGAAATATGGACAGAAAGTGGTCAAAGGAAACCCAAATCCAAGAAGCTACTATAAATGTGTAACCCCTGGTTGTCCAGTGAGAAAACATGTTGAGCGAGCTGCACATGATATGAAAGCTGTGATCACAACTTATGAAGGGAAACACAACCATGATGTGCCTGTAGGACGAGGAAGTGCAAGCTATGGCATGAACAGGAACAACAACACCAACAATGTTACTGCCCCTGCCCCTATAAGGCCCTCAGTGGTCACTAATTATTCTAGCTCAGCAAGTTTGACAAATTCACTTCATGATACAAAGTTACCAACTTCTGGAAATCAAGAACCTTTTCAGCTAGACATGCTTCTGAGCCCTGGAAGCTTTGGATTTGCGGCTCTGGACAGATCAATGGGTTCATATGCCAATCCTGAACAATACTCAGATGCTACATTCTCTAAGGATGACTCATTCCTTCAATCTTTTCTCTCAAAGAACTTCTAA 1548 0.4037 MDDKRGTSHLKTTHDHFRIEVDNFTPPSMPFSPSSIFAPYSDFPPGFSPTALFNSPLFLSSPNMPAPYTTVEPSSGQNQSFNQRNSSTEQHNNKEEERKYSDISFQTQTKQQVPLFQSSSSMFQAQEPIKKQDKLMFNETTKQTDFSFQRTATKSENPSTQGFSEMATIKPEIQSNSASGSCYLNYTNASMSIREQRKSEDGYKWRKYGEKQVKGSENPRSYYKCTHSSCPMKKKVERSLDGHITEIVYKGSHNHPKPQSTKRTSSHSIHQPSSSCTTSGISDHSMGEEDFEQTSHTSYSGGDDDDLGPDAKRWKGENENDGYSYSTAGSRTVKEPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCVTPGCPVRKHVERAAHDMKAVITTYEGKHNHDVPVGRGSASYGMNRNNNTNNVTAPAPIRPSVVTNYSSSASLTNSLHDTKLPTSGNQEPFQLDMLLSPGSFGFAALDRSMGSYANPEQYSDATFSKDDSFLQSFLSKNF. 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10875 515 Pfam WRKY DNA -binding domain 350 406 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g10875 515 Pfam WRKY DNA -binding domain 200 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g10875 515 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 64 429 IPR044810 GO:0003700
Seca4g10875 515 MobiDBLite consensus disorder prediction 303 319 - -
Seca4g10875 515 SMART WRKY_cls 199 257 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g10875 515 SMART WRKY_cls 349 408 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g10875 515 Gene3D WRKY domain 336 402 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g10875 515 Gene3D WRKY domain 186 259 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g10875 515 MobiDBLite consensus disorder prediction 64 101 - -
Seca4g10875 515 FunFam WRKY transcription factor 187 259 - -
Seca4g10875 515 ProSiteProfiles WRKY domain profile. 200 258 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g10875 515 ProSiteProfiles WRKY domain profile. 344 409 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g10875 515 MobiDBLite consensus disorder prediction 64 88 - -
Seca4g10875 515 SUPERFAMILY WRKY DNA-binding domain 341 409 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g10875 515 MobiDBLite consensus disorder prediction 254 284 - -
Seca4g10875 515 FunFam WRKY transcription factor 33 336 402 - -
Seca4g10875 515 SUPERFAMILY WRKY DNA-binding domain 195 258 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g10875 515 MobiDBLite consensus disorder prediction 248 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10875 Seca-Chr4 246311528 246315393 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10875 194 480 WRKY Transcription Factor Family AT2G38470 54.489 5.88e-105 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g10875 WRKY 1.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10875 K13424 - gmx:100127367 696.812
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10875 4 246311528 246315393 Seca4g10875 4 246311528 246315393 ECH