Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10870 ATGGGAGCGTGTTGCAGCTGCCAAGTTTCATTTGTAGGAAAGGTGCATGATGCACAATATGAATCAAACCATAACAATGATACTGCACATGAACATGGTGGGGCCCGGGTCTTGTTGAGAGGAGCCTCTAACTTTGTATCAATGTACAGCCAAAGGGGTACCAAAGGAGTTAATCAAGATGCATTGACAGTTTGGGAGGACTTCACTGGAGAAAAAGACATGATCTTTTGTGGTGTGTTTGATGGTCATGGTCCTCTAGGACACAAGTTTTCACACTGTATACGTGAAAATCTACCCTCCAAACTCTCTTCAGCAATCAAACTCACACAAGAAAGGGTTTGCAAACACTATGATGCTAATGTTGCAAACACAGACAGTAATGATGATGTCTATGATGATGAGGATAACCAACAATTGTCCTTTGCTTCATGGGAGGGATACTTCCTGAGGTCCTTCAAAGAAATGGATCAATACCTTGCTAGGAACATTGACACTGATGGTTATTGTGGCGGTAGCACTGCTGTAACTGTAATCAAACAGGGTGATCAGCTGATAGTTGGTAATTTGGGGGATTCACGTGCAGTTCTTTGCACAAGAGCAGATGACAACCAGCTTATTCCTGTTCCACTTACTGTTGATTTGAACCCAGATATTCCAACTGAAGCTTCAAGGATCATCAATTGTGGAGGTAGAGTTTTTGCTGCAGAAGAAGATCCAGGTGTAAACAGAATGTGGATGCCTGAAGGTGACTGCCCTGGATTAGCTATGTCAAGAGCCTTTGGAGATTTTTGCCTAAAAGACTATGGCCTCTCCTCAGTTCCTGATGTATCTTATAGAACACTTACCAAAAGGGATGAATTTGTGGTTTTGGCTAGTGATGGGGCAAGAATTATCTTTTATATGCATATGGTTAAAGGTCTATGCTTCTCTTTTTTGCAGGTATGGGATGTGCTAACAAACAATGAAGTGATAAACATAGTTGCTTCAGCACCAAAGAGGTCCATGGCAGCCAAATTGTTAGTAAAGCGTGCTATTCAGGCTTGGAAATGCAAGAATCCTTGTTTCCATGTTGATGATTGTACAGCCATATGCTTGTTCCTCAATGATGAGCCTGTTTTAACCCATTCCCAGTCCAATGTGAGAGGAAATAATAAACATCACAGGAAGCACCTGCATTGCTCTTGA 1185 0.4194 MGACCSCQVSFVGKVHDAQYESNHNNDTAHEHGGARVLLRGASNFVSMYSQRGTKGVNQDALTVWEDFTGEKDMIFCGVFDGHGPLGHKFSHCIRENLPSKLSSAIKLTQERVCKHYDANVANTDSNDDVYDDEDNQQLSFASWEGYFLRSFKEMDQYLARNIDTDGYCGGSTAVTVIKQGDQLIVGNLGDSRAVLCTRADDNQLIPVPLTVDLNPDIPTEASRIINCGGRVFAAEEDPGVNRMWMPEGDCPGLAMSRAFGDFCLKDYGLSSVPDVSYRTLTKRDEFVVLASDGARIIFYMHMVKGLCFSFLQVWDVLTNNEVINIVASAPKRSMAAKLLVKRAIQAWKCKNPCFHVDDCTAICLFLNDEPVLTHSQSNVRGNNKHHRKHLHCS. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10870 394 CDD PP2Cc 44 367 IPR001932 -
Seca4g10870 394 SUPERFAMILY PP2C-like 43 369 IPR036457 -
Seca4g10870 394 ProSiteProfiles PPM-type phosphatase domain profile. 45 367 IPR001932 -
Seca4g10870 394 PANTHER PROTEIN PHOSPHATASE 43 365 IPR015655 GO:0004722|GO:0006470
Seca4g10870 394 Gene3D - 41 369 IPR036457 -
Seca4g10870 394 SMART PP2C_4 36 365 IPR001932 -
Seca4g10870 394 Pfam Protein phosphatase 2C 110 294 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10870 Seca-Chr4 246260359 246262551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10870 1 371 PP2C-type Phosphatase Gene Family AT5G01700 46.174 4.96e-110 326
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10870 - - cam:101501265 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10870 4 246260359 246262551 Seca4g10870 4 246260359 246262551 ECH