Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10859 ATGGGAAACAATAGTTGGCATGTCAAAGATTTCCACACAGACCCATTTCAAAAACTGTTCTCTTTTGCAAATGGTGATAGAAGGAAGAAATGGAGGATTCATGAGGGTGGTTTCATTAGCTTAGCCCTTTTCCTGTTTCTTCTGCAGGCTCTGGCTTCCAACATTCAACCTGTCTCAGGCCATTTGTGGGATGGAGTGGTTGTCACCCAAGCAGATTATCAAGCTCTGAGGGCTATTAAGCATGAGCTGATTGACTTCAAAGGGGTTCTGAGAAGCTGGAATGACAGTGGTTTAGGTGCTTGTTCAGGTGGGTGGGCAGGAATCAAATGTGTGAAAGGAGAGGTTATTGCAATTCAGCTTCCTTGGAGAGGTTTGGGTGGCCGTATCTCAGAGAAAATTGGGCAGCTTCAATCTCTTAGGAAGCTCAGTTTCCATGACAATGTTCTTGCTGGTCCTGTCCCTTGGTCTCTTGGCTTCCTTCCTAATCTCAGAGGAGTTTATCTCTTCAATAACAGGCTTTCAGGTTCTATTCCTCCTTCTATTGGCAATTGTCCAATGCTTCAGTCTTTTGATGTTAGCAATAATGCCCTCACTGGTAAAATCCCTCCTAGTTTAGCAAACTCCAATAGGATATTCAGGATTAATTTGAGTTTCAACTCACTTTCTGGATCCATTCCTAGCAGTTTTACTCTGTCCCCTTCTCTAACTGTTCTTGCTCTCCAACACAACAATCTTTCTGGTCCTATCCCAGATTATTGGGGTGGAAAGGGAAAGAAAGCTTCCCAACTTCAGGCATTGACCCTTGATCACAATCTCTTTTCTGGAACCCTCCCAGTTTCTCTAAGCAAGCTGGCTTTGCTTGAAAATGTTTCTTTAAGTCATAACCAGATTGTAGGACCTATTCCAAGTGAACTAGGTGCACTTTCCAGGCTTAGAATTCTTGATCTATCAAACAATGCCATCAATGGCAGCATTCCTGCTAGCTTCTCTAACCTTTCCTCTCTTGTTTCATTGAATCTAGAGAGCAATCAACTTGAAAACCATATCCCAGATACCTTGGACAGGTTACACAACCTTTCTGTGCTTAACCTGAAGAACAACAAGCTTGATGGCCAAATCCCATCAACAATTGGAAACATCTCAAGCATTAGCCAAATTGATTTATCAGAAAATAAATTCCTGGGAGAAATTCCAGATTCCCTTACCAAACTTGCAAATCTCAGTTCATTCAATGTATCTCACAACAATCTATCTGGTCCTGTCCCATCTCTACTTTCCAAAAGATTCAATGCTAGCTCATTTGCAGGGAATCTTGAGCTATGTGGTTACATCAGTTCAAAACCATGCCCTTCACCCCCACCTCATAACCTTCCAGCTCAATCACCAAAGCCTCTTTCCAAGCCACATCACCGCAAATTGAGTACCAAGGACATAATCCTCATAGTAGCAGGTATTCTCCTGTTAATTCTGCTATTACTGTGCTGCTTCTTGCTATGTTGTTTGATCAGGAAAAGAGCTGCTTCAAGCAGAAAGAGTGGCAAGACTGCTAAGGCCACAGCATCTGCCAGGAGTGTTGAAAAAGGTACTCCAGCTGGTGGTGAAGTTGAATCAGGAGGTGAAGCTGGTGGGAAACTAGTTCACTTTGATGGGCCATTTGTATTTACTGCTGATGATCTCTTGTGTGCCACTGCTGAGATAATGGGAAAAAGTGCATATGGAACAGCATACAAGGCAACACTGGAAGATGGGAACCAAGTTGCTGTGAAAAGGTTGAGGGAAAAAACTACTAAAGGGCAGAAGGAATTTGAAGCTGAGGTTGCTGCACTTGGAAAAATCAGACACCCAAATCTCTTAGCCCTTAGAGCCTACTATTTAGGACCCAAAGGAGAGAAGCTTCTTGTCTTTGATTACATGACCAAAGGAAGCCTAGCATCATTCCTTCATGCTCGTGGGCCTGAAATTGTCATTGAATGGCCAACAAGGATGAAAATAGCAATTGGTGTCACACATGGTCTGTGCTACCTTCATAACCAAGAGAATATAGTACATGGGAATCTTACCTCTAGCAATATACTATTAGATGAACAGACAAATGCCCATATCACAGATTTTGGTCTTTCAAAGCTAATGACAGCATCTGCCAACACCAACATCATTGCTACAGCAGGAAGTCTTGGCTACAATGCACCAGAGCTTTCAAAGACAAAGAAGCCTAACACAAAAACTGATGTGTACAGTCTTGGTGTCATCATTTTGGAGCTCCTAACTGGTAAACCACCTGGGGAGCCAACCAATGGCATGGACTTGCCTCAATGGGTGGCATCCATAGTAAAAGAAGAGTGGACAAATGAAGTGTTTGATTTGGAACTCATGAGGGATGCACCAACTATAGGTGATGAGCTTCTTAATACATTGAAATTGGCTCTTCATTGTGTGGATCCATCTCCAGCTGCTAGGCCAGAAGTTAAGCAAGTTTTGCAGCAATTAGAGGAGATCAAACCAGACTTGGCTGCAGGGGATGAGGGAGATAAGGAGGTCCAAACAACAACTGAATAA 2556 0.4292 MGNNSWHVKDFHTDPFQKLFSFANGDRRKKWRIHEGGFISLALFLFLLQALASNIQPVSGHLWDGVVVTQADYQALRAIKHELIDFKGVLRSWNDSGLGACSGGWAGIKCVKGEVIAIQLPWRGLGGRISEKIGQLQSLRKLSFHDNVLAGPVPWSLGFLPNLRGVYLFNNRLSGSIPPSIGNCPMLQSFDVSNNALTGKIPPSLANSNRIFRINLSFNSLSGSIPSSFTLSPSLTVLALQHNNLSGPIPDYWGGKGKKASQLQALTLDHNLFSGTLPVSLSKLALLENVSLSHNQIVGPIPSELGALSRLRILDLSNNAINGSIPASFSNLSSLVSLNLESNQLENHIPDTLDRLHNLSVLNLKNNKLDGQIPSTIGNISSISQIDLSENKFLGEIPDSLTKLANLSSFNVSHNNLSGPVPSLLSKRFNASSFAGNLELCGYISSKPCPSPPPHNLPAQSPKPLSKPHHRKLSTKDIILIVAGILLLILLLLCCFLLCCLIRKRAASSRKSGKTAKATASARSVEKGTPAGGEVESGGEAGGKLVHFDGPFVFTADDLLCATAEIMGKSAYGTAYKATLEDGNQVAVKRLREKTTKGQKEFEAEVAALGKIRHPNLLALRAYYLGPKGEKLLVFDYMTKGSLASFLHARGPEIVIEWPTRMKIAIGVTHGLCYLHNQENIVHGNLTSSNILLDEQTNAHITDFGLSKLMTASANTNIIATAGSLGYNAPELSKTKKPNTKTDVYSLGVIILELLTGKPPGEPTNGMDLPQWVASIVKEEWTNEVFDLELMRDAPTIGDELLNTLKLALHCVDPSPAARPEVKQVLQQLEEIKPDLAAGDEGDKEVQTTTE. 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10859 851 SMART LRR_typ_2 404 427 IPR003591 -
Seca4g10859 851 SMART LRR_typ_2 356 380 IPR003591 -
Seca4g10859 851 SMART LRR_typ_2 332 355 IPR003591 -
Seca4g10859 851 SMART LRR_typ_2 308 331 IPR003591 -
Seca4g10859 851 SMART LRR_typ_2 160 184 IPR003591 -
Seca4g10859 851 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 261 832 - -
Seca4g10859 851 Gene3D Transferase(Phosphotransferase) domain 1 639 848 - -
Seca4g10859 851 FunFam Pollen receptor-like kinase 1 638 843 - -
Seca4g10859 851 Pfam Leucine rich repeat N-terminal domain 71 110 IPR013210 -
Seca4g10859 851 MobiDBLite consensus disorder prediction 512 537 - -
Seca4g10859 851 SUPERFAMILY Protein kinase-like (PK-like) 565 834 IPR011009 -
Seca4g10859 851 Gene3D Phosphorylase Kinase; domain 1 567 638 - -
Seca4g10859 851 FunFam Leucine-rich repeat receptor-like protein kinase 547 637 - -
Seca4g10859 851 Pfam Leucine rich repeat 308 345 IPR001611 GO:0005515
Seca4g10859 851 Pfam Protein tyrosine and serine/threonine kinase 565 829 IPR001245 GO:0004672|GO:0006468
Seca4g10859 851 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 255 452 - -
Seca4g10859 851 CDD STKc_IRAK 567 832 - -
Seca4g10859 851 SUPERFAMILY L domain-like 110 443 - -
Seca4g10859 851 Gene3D Ribonuclease Inhibitor 261 452 IPR032675 -
Seca4g10859 851 ProSiteProfiles Protein kinase domain profile. 561 836 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10859 851 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 69 252 - -
Seca4g10859 851 Gene3D Ribonuclease Inhibitor 68 258 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10859 Seca-Chr4 246132296 246135700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10859 61 851 Receptor kinase-like Gene Family AT3G51740 69.193 0.0 1062
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca4g10859 PK_Tyr_Ser-Thr 3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10859 - - gmx:100799290 1372.07