Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10853 ATGTCAGACAACACTCCTCAACCCCCAACCCCCAACACCAAAGCCCCCTCCCGTGGACCAACAAATAAAAATAAAAAAAAAGAGTATGATGTTTTTGTTAGCTTTAGGGGGAAGGACATCCGCGAGGATTTTCTTAGCCATTTGATTGAGGCTTTTGGTCAAAAACACATATATGCCTTTGTAGATGACAAACTTGAGAAGGGAGATGAAATATGGCCATCACTTGTTAGAGCAATTGAAGAATCATTAATTTCATTGGTCATATTCTCAGAAAACTATGCTTCTTCACGTTGGTGTTTGGAAGAACTTGTCAAAATACATGAATGCAAAGAGAAATATGGTCGGATCATAATACCTGTTTTCTACCGTGTACATCCCACGAATGTAAGACATCAAAGTGGGAGTTATGAAATTGCACTTGCTGAACATGGAAAAAGGTATGATTCAACCAAGGTGCAAATTTGGCGACATGCTTTGAGCAAATCTGCTAATATTGCAGGAGCTAAGTCATCAGATTATCAAAATGATGCTAAGTTGCTTGAAGAAATTGTGAATCTTGTGTTGAGAAGATTGAGTAAAGACTCGGTTCTCTCAAAAGGACTTGTTGGAATTGACAAAAAAGTTGCACATGTAGAATCATTGTTACAACAAAAGTCTAAAGACATCCGTGTTATTGGAATTTGGGGTATGGGTGGTATTGGAAAAACAACTATCGCAGAGGAAGTATTTAACAAGCTACGGTATGAATATGATGGTTGTTGTTTCTTGGCAAATGAAAGAGAAGAATCAAAGAGACATGGATTAATTTTTTTGAAAGCAAAAATTTTTTCTGCACTTTTAGCGGAAGATGTGATGATTGACACACCAAATGGATTTTCCAATGATATTGAGAGGCGGATTGGTCGTATGAAGGTTCTTATTGTTCTTGATGATGTGAATGATTCAGATCACCTAGAAAAATTATTTGGGAATTTTGATTGTTTTGGATCAGATAGTAGAATAATCGTTGATGATATATACCCGGTTGGGGTATTGGAGTCTAGTGAAGCACTTAAGCTTTTCAATTTGAATGCCTTTCACCAAAGTCATATGCAAATGGAGTATAAAGAGCTATCAATGAGGGTGGTCAATTATGCTGATGGCATTCCATTAGTTCTTAAGGTTTTGGGTAATCTTCTTCGTGGAAAAGAGAAGGAAATATGGGAAAGTCAGCTAAACAAGCTTCAAAAAATGCCAATTGAAAATGTTTATAATGTAATGAGACTGAGTTATGATGATTTAGATCGTAGAGAGAAAAAGATATTCTTAGATCATGGTGAAAGTGATGATTCAGTGGTTGTTGGGTTAGAAAGGCTAAAAGATAAAGCACTGATAACTTTTTCAGAGGATAATGTTATATCTATGCATGATAAGATAAGAGAAATGGCTTATGAGATTGTACGCCAAGAATCTGATGAAGACCCTGGACGTCGCAGCCGACTGTGGGATGTTGATGACATTAATGAAGTATTGGAATATGACAAGGGTACTAGGGCCATTAGAAGCATACAGATGCATTTGTTGGAAATAGGGGACTCGAAGTTGAATTTAAGTCCTTATATATTTGCTAAGATGAGCAAACTACAATTTCTGGATTTTTACAGCAAGAATGATCAAGACTTCTTCAATCTCCCTAAAAGACTTATCTCTTTTCCAAGTGAACTAAGATATCTCCGTTGGAAGTGTTACCCTCTGAAATCCTTGCCAGATAATTTTTCAGCTGCAAAACTTGTCATATTAGACCTGTCAGGCAGCAGAGTGCAAAAACTTTGGGATGGAGTCCAGAATCTGGTGAATTTAAAAGAGGTCAATCTCTCGGACTCTAAATTCTTAAATGAGCTGCCAAACTTTTCAAAGGCCAAAAATCTTGAAGTACTAAATATCAGATGTTGTTCTCGGTTGACTAATGTGCATCGATCTATTTTCTTTCTTGACAAGCTTGAGAAATTGAATCTTGGTTTATGCACATCCCTTATCACACTTACAACCTACACCCATTTATGTTGCCTTAGTGATCTTAATGTTGGAGGGTGCAAAGATATTAGGGAATTCTCAGTGACATCAGAGAATATGATAAAACTGAATTTAGGAGGCACAGGCATCAAGGCATTGCCATCAACATTTGGATGTCAAAGCAAGCTTGAAATCTTGTCTCTAACTCGCAGTTTCATTGAGGGGTTACCTTCATGCATCAAGAATCTTACAAGATTGCGATGTCTAGACATAAGATTATGCAGTGAGATTCAGACAATACCAGAGCTTCCCCTGTCCCTTGAAACTTTACGTGCTGAAAAGTGCAAATTACTGAAGACTGTGTTGTTCCCTTCAATAGCTAGTGAACAATTCAAGGAAAACAGGAAAAGGGTTGGGTTTTGGAATTGCTTGAACTTGGATGAACATTCCCTCATGACTATTGGCTTCAATGTGCAAATCAACGTGATTAAATTTGCATATGAACATCTATCCACACAAAAACATGATTGTGTTGAAAATTATGATGATTACCATGATAATTATCATTCTTATCAAGCCATGTACGTGTATCCAGGAAGCAGAATTCCAGACTGGTTTGTGTGTGAGAAAATAGAGGATCATGTAATTATTGATCTCTCTTCTCCACATTCCCCTCTATTGGGCTTCATTTTCTGCTTCATCATTGAAAAGGACCAATTATTTGGTGATACATTTGTATTTAACATTGCTATCAGTGATCTTGGGGATGAAGTTGAAAACGGTAGGGTCATTATGTACATGTATAGGACATTGACTATTGAATCAGATCATGTATGTGTGGTGTATGACCAACGATGTTCTGGCTACCTAACAAGCAGAGCAAAAAAGCAGGCAAGGTTTAAAATCCAGGTCACAGCAGAGGCACAACTCAGGCGTCTAGGAAAGGAGAGACGACATGTGCCATTAAAAGGGTTTGGAGTCAGTCCTGTAAGCACCTTAGCATATAACAATCTCATTGAACTAATGAAATTGTATGACTCAATATCTTAA 3042 0.3731 MSDNTPQPPTPNTKAPSRGPTNKNKKKEYDVFVSFRGKDIREDFLSHLIEAFGQKHIYAFVDDKLEKGDEIWPSLVRAIEESLISLVIFSENYASSRWCLEELVKIHECKEKYGRIIIPVFYRVHPTNVRHQSGSYEIALAEHGKRYDSTKVQIWRHALSKSANIAGAKSSDYQNDAKLLEEIVNLVLRRLSKDSVLSKGLVGIDKKVAHVESLLQQKSKDIRVIGIWGMGGIGKTTIAEEVFNKLRYEYDGCCFLANEREESKRHGLIFLKAKIFSALLAEDVMIDTPNGFSNDIERRIGRMKVLIVLDDVNDSDHLEKLFGNFDCFGSDSRIIVDDIYPVGVLESSEALKLFNLNAFHQSHMQMEYKELSMRVVNYADGIPLVLKVLGNLLRGKEKEIWESQLNKLQKMPIENVYNVMRLSYDDLDRREKKIFLDHGESDDSVVVGLERLKDKALITFSEDNVISMHDKIREMAYEIVRQESDEDPGRRSRLWDVDDINEVLEYDKGTRAIRSIQMHLLEIGDSKLNLSPYIFAKMSKLQFLDFYSKNDQDFFNLPKRLISFPSELRYLRWKCYPLKSLPDNFSAAKLVILDLSGSRVQKLWDGVQNLVNLKEVNLSDSKFLNELPNFSKAKNLEVLNIRCCSRLTNVHRSIFFLDKLEKLNLGLCTSLITLTTYTHLCCLSDLNVGGCKDIREFSVTSENMIKLNLGGTGIKALPSTFGCQSKLEILSLTRSFIEGLPSCIKNLTRLRCLDIRLCSEIQTIPELPLSLETLRAEKCKLLKTVLFPSIASEQFKENRKRVGFWNCLNLDEHSLMTIGFNVQINVIKFAYEHLSTQKHDCVENYDDYHDNYHSYQAMYVYPGSRIPDWFVCEKIEDHVIIDLSSPHSPLLGFIFCFIIEKDQLFGDTFVFNIAISDLGDEVENGRVIMYMYRTLTIESDHVCVVYDQRCSGYLTSRAKKQARFKIQVTAEAQLRRLGKERRHVPLKGFGVSPVSTLAYNNLIELMKLYDSIS. 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10853 1013 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 29 780 IPR044974 GO:0006952
Seca4g10853 1013 Pfam TIR domain 29 192 IPR000157 GO:0007165
Seca4g10853 1013 ProSiteProfiles TIR domain profile. 27 191 IPR000157 GO:0007165
Seca4g10853 1013 SMART till_3 28 165 IPR000157 GO:0007165
Seca4g10853 1013 SUPERFAMILY Toll/Interleukin receptor TIR domain 24 167 IPR035897 -
Seca4g10853 1013 SUPERFAMILY L domain-like 520 807 - -
Seca4g10853 1013 Pfam NB-ARC domain 209 424 IPR002182 GO:0043531
Seca4g10853 1013 Gene3D - 25 194 IPR035897 -
Seca4g10853 1013 Gene3D Ribonuclease Inhibitor 513 702 IPR032675 -
Seca4g10853 1013 MobiDBLite consensus disorder prediction 1 24 - -
Seca4g10853 1013 Gene3D - 195 336 IPR027417 -
Seca4g10853 1013 FunFam Disease resistance protein (TIR-NBS-LRR class) 25 193 - -
Seca4g10853 1013 Gene3D - 344 428 IPR042197 -
Seca4g10853 1013 PRINTS Disease resistance protein signature 379 393 - -
Seca4g10853 1013 PRINTS Disease resistance protein signature 745 761 - -
Seca4g10853 1013 PRINTS Disease resistance protein signature 224 239 - -
Seca4g10853 1013 PRINTS Disease resistance protein signature 299 313 - -
Seca4g10853 1013 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 437 IPR027417 -
Seca4g10853 1013 SUPERFAMILY "Winged helix" DNA-binding domain 415 505 IPR036390 -
Seca4g10853 1013 Gene3D Ribonuclease Inhibitor 703 819 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10853 Seca-Chr4 246072899 246077700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10853 27 775 WRKY Transcription Factor Family AT4G12020 31.439 1.19e-90 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10853 - - aprc:113850949 1222.99