Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10851 ATGAGGATATTCTTCCCTCTTTTTCTTCACTTTTTCTTCAGCTTTGCACTTTCTCTATCCTCCGATGGCCTCGCTCTCCTCTCTCTAAAATCCGCCGTCGACCAACCCGCCGGTGCTTCCGCATTCTCCGACTGGAACGACGGTGACATCACCCCCTGCGGCTGGTCGGGGATCTCCTGCGCGAACATCTCAGGCCTCCCGGAGCCGCGCGTGGTCGGAATCGCCCTCGCCGGAAAATCCCTCCGCGGCTACATTCCCTCGGAGCTCGGCAGCCTCCGCTACCTCCGCCGCCTCAACCTCCACGACAACGACTTCTACGGTGTAGTTCCGGTGCAGCTCTTCAACGCCACCGCACTCCACAGTATCTTCCTCCACCGCAACAACCTCTCCGGTCCATTCCCTCCCTCCGTCTGCACCATTCCCCGCCTCCAAAACCTCGACCTCTCCGACAACTCCTTCTCCGGTCACATCCCCGACGCCGTCAAGAACTGCAAGCAGCTCCAGCGGCTGATCCTCGCCCGGAACAAATTCTCCGGCGAGATTCCAACCGGCGTGTGGCCGGAACTCGAGAATCTCATCCAGCTCGACCTCTCCGCCAACGACTTCCAAGGTTTAATCCCGGAAGACATAGGCGACCTAGGATCCCTCTCAGGCACACTGAACCTTTCCTTCAACCACTTCTCCGGTGGAATTCCGAAGTCTCTCGGTAAATTACCGGCCACCGTGAGCTTCGATCTCCGGAATAATAATCTAAGTGGCGAGATTCCCCAAACGGGGTCGTTTTCGAATCAGGGCCCAACCGCATTCCTGGGTAACCCAAACCTCTGTGGCTTTCCGCTTCGGAAATCATGCACTGGTTCGGACCGAGGCTCGGTGGGTCCAGGTTCATCTTCGCGTGAACAGGGTAACCGGGCCAAAGGCCCGAGCCCAGGTTTGATCATTTTGATCTCAGTGGCTGATGCTGCTGCGGTTGCTCTTATTGGACTTGTGGTTGTGTATGTTTATTGGAAGAAGAAGGATGATGGCAATGCGTGTAGCTGCACTGGGAAGAGCAAGTTTGGTGGGAGTGATGATGATGAGAAAGGGAATGTGTGTGCATTCCCATGTATTTGTGGTTCGAAGAATGAAGATGATGAGGGTGAGGTGGAGGTAGATGAGGCAGGGAAAGGGGAAGGGGAACTGGTGACACTTGATAAAGGTTTAAGCATTGAGCTCGATGAGCTTTTGAGGGCTTCAGCGTATGTGTTGGGGAAGAGTGGTTTGGGGATTGTGTACAAGGTGGTGCTGGGAAATGGGGTGCCCGTGGCTGTGAGGAGATTAGGAGAAGGTGGAGAACAGAGGTACAAGGAGTTTGCGGCAGAGGTGCAGGCAATTGGGAAGGTGAAGCACCCTAACATTGTGAGGTTGAGAGCTTATTATTGGGCCCATGATGAGAAGCTTCTCATCAGTGATTTCATCTCCAATGGCAATTTAACCCATGTCCTTCGAGAGAGAACCAACAATTACAAAGCCCCTGAGGCTCGTGTCCCTGGCTGCAGACCCACCCAGAAATGGGACGTATATTCATTTGGAGTTGTATTGCTTGAATTGCTAACTGGGAAGTCACCAGAATCATCTCCCACTACATCAACTTCTATGGAAGTTCCTGACTTGGTAAGGTGGGTAAGAAATGGGTTCGATCAAGAAAGCCCATTATCTGAAATGGTTGATCCATCGCTGCTCCAAGAAGTGCGTGCTAAGAAAGAGGTACTGGCTGTGTTTCATGTAGCCCTTGGATGCACTGAAGGAGACCCTGAGGTCAGGCCTAGAATGAAAACTGTCTCTGAAAATCTTGAAAGGATTGGAACGTAA 1851 0.5284 MRIFFPLFLHFFFSFALSLSSDGLALLSLKSAVDQPAGASAFSDWNDGDITPCGWSGISCANISGLPEPRVVGIALAGKSLRGYIPSELGSLRYLRRLNLHDNDFYGVVPVQLFNATALHSIFLHRNNLSGPFPPSVCTIPRLQNLDLSDNSFSGHIPDAVKNCKQLQRLILARNKFSGEIPTGVWPELENLIQLDLSANDFQGLIPEDIGDLGSLSGTLNLSFNHFSGGIPKSLGKLPATVSFDLRNNNLSGEIPQTGSFSNQGPTAFLGNPNLCGFPLRKSCTGSDRGSVGPGSSSREQGNRAKGPSPGLIILISVADAAAVALIGLVVVYVYWKKKDDGNACSCTGKSKFGGSDDDEKGNVCAFPCICGSKNEDDEGEVEVDEAGKGEGELVTLDKGLSIELDELLRASAYVLGKSGLGIVYKVVLGNGVPVAVRRLGEGGEQRYKEFAAEVQAIGKVKHPNIVRLRAYYWAHDEKLLISDFISNGNLTHVLRERTNNYKAPEARVPGCRPTQKWDVYSFGVVLLELLTGKSPESSPTTSTSMEVPDLVRWVRNGFDQESPLSEMVDPSLLQEVRAKKEVLAVFHVALGCTEGDPEVRPRMKTVSENLERIGT. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10851 616 Gene3D Transferase(Phosphotransferase) domain 1 497 616 - -
Seca4g10851 616 PANTHER OS05G0588300 PROTEIN 498 614 - -
Seca4g10851 616 SUPERFAMILY Protein kinase-like (PK-like) 415 613 IPR011009 -
Seca4g10851 616 Pfam Leucine rich repeat 141 202 IPR001611 GO:0005515
Seca4g10851 616 FunFam Leucine-rich repeat receptor-like protein kinase 393 485 - -
Seca4g10851 616 FunFam Leucine-rich repeat receptor-like protein kinase 19 183 - -
Seca4g10851 616 MobiDBLite consensus disorder prediction 286 306 - -
Seca4g10851 616 Gene3D Ribonuclease Inhibitor 186 286 IPR032675 -
Seca4g10851 616 Gene3D Ribonuclease Inhibitor 19 185 IPR032675 -
Seca4g10851 616 ProSiteProfiles Protein kinase domain profile. 410 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10851 616 MobiDBLite consensus disorder prediction 289 304 - -
Seca4g10851 616 FunFam Leucine-rich repeat receptor-like protein kinase 191 286 - -
Seca4g10851 616 Pfam Leucine rich repeat N-terminal domain 20 60 IPR013210 -
Seca4g10851 616 Gene3D Phosphorylase Kinase; domain 1 404 485 - -
Seca4g10851 616 SUPERFAMILY L domain-like 20 281 - -
Seca4g10851 616 Pfam Protein tyrosine and serine/threonine kinase 416 502 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10851 Seca-Chr4 246056328 246059947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10851 497 614 Receptor kinase-like Gene Family AT1G67510 73.171 2.36e-48 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca4g10851 PK_Tyr_Ser-Thr 1.6e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10851 - - var:108346287 727.628