Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10850 ATGAAGCAAATGGTAGGAATGGTGGTTTCCAATAAGATGCAAAAGTCGGTGGTGGTGGCAGTTGATAGACTATTCTACCACAAATTGTACAACCGATATGTCAAGCGCACCTCTAAATTTATGGCTCATGATGAGCACAATCATTGTAACATTGGTGACCGAGTTCGTCTGGATCCTTCTAGGCCTTTGAGCAAGCACAAACATTGGGTGGTTGCTGAAATTCTCAAGAAAGCACGCATATATGTTCCACCCTCCACACCAGTGTCTGAGAGTGTGAGCTCCAGCTCTCAAGCACCTGCATCCTGA 306 0.4542 MKQMVGMVVSNKMQKSVVVAVDRLFYHKLYNRYVKRTSKFMAHDEHNHCNIGDRVRLDPSRPLSKHKHWVVAEILKKARIYVPPSTPVSESVSSSSQAPAS. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10850 101 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 80 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca4g10850 101 FunFam 30S ribosomal protein S17 1 100 - -
Seca4g10850 101 SUPERFAMILY Nucleic acid-binding proteins 2 88 IPR012340 -
Seca4g10850 101 NCBIfam 30S ribosomal protein S17 2 71 IPR019984 GO:0003735|GO:0005840|GO:0006412
Seca4g10850 101 Hamap 30S ribosomal protein S17 [rpsQ]. 1 76 IPR019984 GO:0003735|GO:0005840|GO:0006412
Seca4g10850 101 Pfam Ribosomal protein S17 6 73 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca4g10850 101 PRINTS Ribosomal protein S17 family signature 20 43 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca4g10850 101 PRINTS Ribosomal protein S17 family signature 52 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca4g10850 101 PRINTS Ribosomal protein S17 family signature 62 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
Seca4g10850 101 Gene3D - 1 79 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10850 Seca-Chr4 246050900 246052367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10850 4 75 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 36.986 2.40e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10850 K02961 - gmx:100500188 162.54