Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10831 ATGGCTGCAAAAGCTCTTCTTAGTTTCCTCATCTTTCCCATTCTCCTAGTTGCTGCTAAGGCTCTTGCCTTCCAATTCCCTGGATTCAATAACCATGAAATCAATCTCACCCTTGATGGATCTTCCAAAATTGTCAAACCCCAAGGTATACTTGAGCTCACAAACAGAGTAAACAATAAAATAGGCCATGCATTTTATAACAAATCCATTCAAATGTTTGAGAAAACAAATTCTTCAGTTGAACCAAAAGTTTCTTCCTTTAGTACATGCTTTGTCTTCTCAATTGTACCACCAAGCTCTGGCCCTGGTGGCTTTGGCCTTGCCTTCACCATAGCTCCCTCACCACAATTTCCAGGAGCTTTTGCTGACCATTATCTTGGTCTCTTTAACCCTTCTAATGATAGGAATACCTCAAATCACATCTTTGTAGTTGAATTTGACACAGTCAATGGCTACCAAGCTGCATCTGACACTGAAGGAAACCATGTTGGGGTAAATTTTAATGGCATGTTCTCATATAGAGCTGAACCAGCAGCTTATATTGAAGAAGGCACTGATGCAAAGGAAGAGTTTAACATGGAGAAAGCTGATGCTGTCTGTGCTTGGATAGAATATGATGGTGAAACAAAAATTTTGAATGTAACAATAGCCCCTTTATCAGTGCCAAGACCAAGCAAACCACTTATATCTGAGGTCATTGACCTTGAGTCTATTATGAAGGAAAGCATGTTTGTTGGTTTCTCAGCCTCAACAGGCCAGAGGAAAGCAAGCTCCCATTATATTTTGGGATGGAGTTTTTCAATGAATGGAGTTGCCCCTTCACTCAATTTTTCACAGCTTCCAAAGCCACCACAAAAGGAGAAAGATCCATCCTCATTCCCTTGGGTCAAGGTTGCAGTTGGCATCTTATCTGCTTTGACCTTTACTCTCTTGTGTTTTTTATTCTTAATGGCACTCTATAAGAGACATATGAGATTTGAAACTCTTGAAGACTGGGAGCTGGACTGTCCTCACAGATTCAGATATAGAGATCTTCACATGGCAACCAAAGGGTTCAAAGAGAGCCAGCTAATTGGAGTTGGTGGTTTTGGTTCTGTATACAAAGGTGTCTTACCTGATACAGGAAGTGAGGTTGCTGTTAAAAGGATCAACCGCAGCCCAATGCAAGGAATGAGGGAATTTGCAGCTGAGATTGAAAGCTTAGGAAGATTGAGGCATAAGAATTTGGTTAATCTTCAAGGGTGGTGCAAGAACAAGAATGATCTACTCCTTATCTATGATTACATTCCAAATGGGAGCCTTGATACTCTCCTATTCAAGGGCAATAAAAATTTTGCTTTGAATTGGGACCAGAGGTTCAATATTCTCAAAGGTGTAACTGCTGGGCTATTGTATCTGCATGAAGAGTGGGAGCAAGTGGTGATCCATAGAGATGTGAAATCTAGCAATATTCTGATAGATGGTGACTTGAATGCTCGTTTAGGTGACTTTGGACTAGCAAGACTCTGTAGTCATGATCAAGTATCACACACAACTAGTGTGGTTGGCACAATTGGGTATATTGCTCCAGAGTTAACTAGGACAGGTAAAGCATCTACAAGCTCTGATGTGTATGCATATGGGGTTCTACTCCTTGAAGTGGTTGCTGGAACAAGACCAGTTGGCTCAGGTCAGTTTTTCTTGGTGGATTGGGTTATTGAAAATTACCAACTGGGTCAGATTCTTGAAGTAGTTGATCCTAAGCTAGATTCAGTTTATGATGAGGAAGAAGTGGAGTTGGTTCTGAAATTGGGTCTTCTTTGCACTCAATACAAAGCAGAGTTTAGACCAACCATGAAACAAGTGACTAGGTACCTAAACTTTGATGACCCTCTTCCTGATGTTGATTGGAGATACTATGATTCTCAGAGCAGAAGAACGAACCCAGGTTTCTTAGAAGTCGTGTCCACAAGTATAACTGCATCTTCTTATAGTTTATCCACCACTGGCAGGAGTACAGTGCCTATAGAAACTGGTAGATAG 2022 0.4095 MAAKALLSFLIFPILLVAAKALAFQFPGFNNHEINLTLDGSSKIVKPQGILELTNRVNNKIGHAFYNKSIQMFEKTNSSVEPKVSSFSTCFVFSIVPPSSGPGGFGLAFTIAPSPQFPGAFADHYLGLFNPSNDRNTSNHIFVVEFDTVNGYQAASDTEGNHVGVNFNGMFSYRAEPAAYIEEGTDAKEEFNMEKADAVCAWIEYDGETKILNVTIAPLSVPRPSKPLISEVIDLESIMKESMFVGFSASTGQRKASSHYILGWSFSMNGVAPSLNFSQLPKPPQKEKDPSSFPWVKVAVGILSALTFTLLCFLFLMALYKRHMRFETLEDWELDCPHRFRYRDLHMATKGFKESQLIGVGGFGSVYKGVLPDTGSEVAVKRINRSPMQGMREFAAEIESLGRLRHKNLVNLQGWCKNKNDLLLIYDYIPNGSLDTLLFKGNKNFALNWDQRFNILKGVTAGLLYLHEEWEQVVIHRDVKSSNILIDGDLNARLGDFGLARLCSHDQVSHTTSVVGTIGYIAPELTRTGKASTSSDVYAYGVLLLEVVAGTRPVGSGQFFLVDWVIENYQLGQILEVVDPKLDSVYDEEEVELVLKLGLLCTQYKAEFRPTMKQVTRYLNFDDPLPDVDWRYYDSQSRRTNPGFLEVVSTSITASSYSLSTTGRSTVPIETGR. 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10831 673 SUPERFAMILY Concanavalin A-like lectins/glucanases 21 285 IPR013320 -
Seca4g10831 673 CDD lectin_legume_LecRK_Arcelin_ConA 22 270 IPR001220 GO:0030246
Seca4g10831 673 ProSiteProfiles Protein kinase domain profile. 352 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10831 673 FunFam Lectin-domain containing receptor kinase VI.3 337 428 - -
Seca4g10831 673 CDD STKc_IRAK 358 620 - -
Seca4g10831 673 Pfam Legume lectin domain 22 281 IPR001220 GO:0030246
Seca4g10831 673 Gene3D Phosphorylase Kinase; domain 1 337 428 - -
Seca4g10831 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 474 486 IPR008271 GO:0004672|GO:0006468
Seca4g10831 673 Pfam Protein kinase domain 352 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10831 673 Gene3D Transferase(Phosphotransferase) domain 1 429 629 - -
Seca4g10831 673 SUPERFAMILY Protein kinase-like (PK-like) 336 634 IPR011009 -
Seca4g10831 673 ProSitePatterns Protein kinases ATP-binding region signature. 358 381 IPR017441 GO:0005524
Seca4g10831 673 PANTHER - 39 621 - -
Seca4g10831 673 Gene3D - 19 275 - -
Seca4g10831 673 FunFam L-type lectin-domain containing receptor kinase V.9 20 274 - -
Seca4g10831 673 SMART serkin_6 352 619 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10831 673 FunFam L-type lectin-domain containing receptor kinase S.4 429 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10831 Seca-Chr4 245709499 245711520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10831 15 635 Receptor kinase-like Gene Family AT3G08870 52.615 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Seca4g10831 Pkinase 7.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10831 - - gmx:100792854 1018.07